Analysis of interatomic Contacts of Structural Units in PDB entry:
6V9Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V9Q entry

There are 11 chains in PDB entry 6V9Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	C 1	A 61
A	THR 16	ILE 630
J	MET 1	VAL 391
I	MET 1	VAL 391
G	MET 1	LYS 350
B	MET 1	LYS 350
C	MET 1	LYS 350
D	MET 1	LYS 350
E	MET 1	LYS 350
F	MET 1	LYS 350
H	LYS 6	MET 169

There are102 helices in PDB entry 6V9Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	23	Right-handed alpha
Helix 2	AA2	A	36	46	Right-handed alpha
Helix 3	AA3	A	68	81	Right-handed alpha
Helix 4	AA4	A	171	185	Right-handed alpha
Helix 5	AA5	A	219	229	Right-handed alpha
Helix 6	AA6	A	243	248	Right-handed alpha
Helix 7	AA7	A	248	253	Right-handed alpha
Helix 8	AA8	A	411	427	Right-handed alpha
Helix 9	AA9	A	492	499	Right-handed alpha
Helix 10	AB1	A	512	519	Right-handed 310
Helix 11	AB2	A	524	532	Right-handed alpha
Helix 12	AB3	A	549	560	Right-handed alpha
Helix 13	AB4	A	608	612	Right-handed 310
Helix 14	AB5	J	13	25	Right-handed alpha
Helix 15	AB6	J	30	44	Right-handed alpha
Helix 16	AB7	J	48	52	Right-handed 310
Helix 17	AB8	J	67	82	Right-handed alpha
Helix 18	AB9	J	89	93	Right-handed 310
Helix 19	AC1	J	128	135	Right-handed alpha
Helix 20	AC2	J	139	144	Right-handed 310
Helix 21	AC3	J	168	173	Right-handed alpha
Helix 22	AC4	J	195	205	Right-handed alpha
Helix 23	AC5	J	216	231	Right-handed alpha
Helix 24	AC6	J	236	246	Right-handed alpha
Helix 25	AC7	J	248	265	Right-handed alpha
Helix 26	AC8	J	274	279	Right-handed alpha
Helix 27	AC9	J	297	307	Right-handed alpha
Helix 28	AD1	J	325	333	Right-handed alpha
Helix 29	AD2	J	335	342	Right-handed alpha
Helix 30	AD3	J	369	380	Right-handed alpha
Helix 31	AD4	J	386	390	Right-handed 310
Helix 32	AD5	I	13	25	Right-handed alpha
Helix 33	AD6	I	29	44	Right-handed alpha
Helix 34	AD7	I	48	52	Right-handed 310
Helix 35	AD8	I	67	82	Right-handed alpha
Helix 36	AD9	I	89	93	Right-handed 310
Helix 37	AE1	I	128	135	Right-handed alpha
Helix 38	AE2	I	139	144	Right-handed 310
Helix 39	AE3	I	168	173	Right-handed alpha
Helix 40	AE4	I	195	205	Right-handed alpha
Helix 41	AE5	I	216	231	Right-handed alpha
Helix 42	AE6	I	236	246	Right-handed alpha
Helix 43	AE7	I	248	265	Right-handed alpha
Helix 44	AE8	I	274	279	Right-handed alpha
Helix 45	AE9	I	297	307	Right-handed alpha
Helix 46	AF1	I	325	333	Right-handed alpha
Helix 47	AF2	I	335	342	Right-handed alpha
Helix 48	AF3	I	369	380	Right-handed alpha
Helix 49	AF4	I	386	390	Right-handed 310
Helix 50	AF5	G	105	123	Right-handed alpha
Helix 51	AF6	G	125	138	Right-handed alpha
Helix 52	AF7	G	177	183	Right-handed alpha
Helix 53	AF8	G	187	199	Right-handed alpha
Helix 54	AF9	G	260	269	Right-handed alpha
Helix 55	AG1	G	305	312	Right-handed alpha
Helix 56	AG2	G	314	321	Right-handed alpha
Helix 57	AG3	G	327	344	Right-handed alpha
Helix 58	AG4	B	105	123	Right-handed alpha
Helix 59	AG5	B	125	137	Right-handed alpha
Helix 60	AG6	B	177	183	Right-handed alpha
Helix 61	AG7	B	187	200	Right-handed alpha
Helix 62	AG8	B	260	269	Right-handed alpha
Helix 63	AG9	B	306	311	Right-handed alpha
Helix 64	AH1	B	314	321	Right-handed alpha
Helix 65	AH2	B	328	344	Right-handed alpha
Helix 66	AH3	C	105	123	Right-handed alpha
Helix 67	AH4	C	125	138	Right-handed alpha
Helix 68	AH5	C	177	183	Right-handed alpha
Helix 69	AH6	C	187	199	Right-handed alpha
Helix 70	AH7	C	260	269	Right-handed alpha
Helix 71	AH8	C	306	311	Right-handed alpha
Helix 72	AH9	C	312	321	Right-handed alpha
Helix 73	AI1	C	328	344	Right-handed alpha
Helix 74	AI2	D	105	123	Right-handed alpha
Helix 75	AI3	D	125	138	Right-handed alpha
Helix 76	AI4	D	177	183	Right-handed alpha
Helix 77	AI5	D	187	199	Right-handed alpha
Helix 78	AI6	D	260	269	Right-handed alpha
Helix 79	AI7	D	305	310	Right-handed alpha
Helix 80	AI8	D	314	321	Right-handed alpha
Helix 81	AI9	D	331	344	Right-handed alpha
Helix 82	AJ1	E	105	123	Right-handed alpha
Helix 83	AJ2	E	125	137	Right-handed alpha
Helix 84	AJ3	E	177	183	Right-handed alpha
Helix 85	AJ4	E	187	199	Right-handed alpha
Helix 86	AJ5	E	260	269	Right-handed alpha
Helix 87	AJ6	E	305	311	Right-handed alpha
Helix 88	AJ7	E	314	321	Right-handed alpha
Helix 89	AJ8	E	328	344	Right-handed alpha
Helix 90	AJ9	F	63	67	Right-handed 310
Helix 91	AK1	F	105	123	Right-handed alpha
Helix 92	AK2	F	125	137	Right-handed alpha
Helix 93	AK3	F	177	183	Right-handed alpha
Helix 94	AK4	F	187	200	Right-handed alpha
Helix 95	AK5	F	260	269	Right-handed alpha
Helix 96	AK6	F	306	311	Right-handed alpha
Helix 97	AK7	F	314	321	Right-handed alpha
Helix 98	AK8	F	328	344	Right-handed alpha
Helix 99	AK9	H	17	35	Right-handed alpha
Helix 100	AL1	H	71	80	Right-handed alpha
Helix 101	AL2	H	111	124	Right-handed alpha
Helix 102	AL3	H	134	138	Right-handed 310

There are 50 sheets in PDB entry 6V9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	122	123	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	217	218	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	189	190	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	211	215	anti-parallel
Strand 3	A	587	598	parallel
Strand 4	A	542	543	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	211	215	anti-parallel
Strand 3	A	587	598	parallel
Strand 4	A	566	572	anti-parallel
Strand 5	A	622	627	anti-parallel
Strand 6	A	614	618	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	260	262	anti-parallel
Strand 3	A	406	407	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	443	first strand
Strand 2	A	478	484	anti-parallel
Strand 3	A	387	390	anti-parallel
Strand 4	A	521	522	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	509	510	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	448	first strand
Strand 2	A	474	475	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	95	100	first strand
Strand 2	J	106	109	anti-parallel
Strand 3	J	114	116	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	322	323	first strand
Strand 2	J	367	368	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	95	100	first strand
Strand 2	I	106	109	anti-parallel
Strand 3	I	114	116	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	322	323	first strand
Strand 2	I	367	368	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	102	103	first strand
Strand 2	G	7	9	anti-parallel
Strand 3	G	345	346	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	14	first strand
Strand 2	G	84	93	anti-parallel
Strand 3	G	18	24	anti-parallel
Strand 4	G	206	214	first strand
Strand 5	G	151	158	anti-parallel
Strand 6	G	166	171	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	31	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	84	93	anti-parallel
Strand 4	G	254	259	first strand
Strand 5	G	248	251	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	270	272	first strand
Strand 2	G	282	283	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	289	290	first strand
Strand 2	G	295	296	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	7	9	anti-parallel
Strand 3	B	345	346	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	84	93	anti-parallel
Strand 3	B	18	23	anti-parallel
Strand 4	B	207	214	first strand
Strand 5	B	151	155	anti-parallel
Strand 6	B	167	171	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	18	23	anti-parallel
Strand 3	B	84	93	anti-parallel
Strand 4	B	254	259	first strand
Strand 5	B	248	251	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	41	first strand
Strand 2	B	69	75	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	272	first strand
Strand 2	B	282	283	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	290	first strand
Strand 2	B	295	296	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	7	9	anti-parallel
Strand 3	C	345	346	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	84	91	anti-parallel
Strand 4	C	207	214	anti-parallel
Strand 5	C	151	156	anti-parallel
Strand 6	C	166	171	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	254	259	anti-parallel
Strand 4	C	248	251	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	41	first strand
Strand 2	C	69	75	anti-parallel
Strand 3	C	242	244	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	272	first strand
Strand 2	C	282	283	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	295	296	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	7	9	anti-parallel
Strand 3	D	345	346	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	84	92	anti-parallel
Strand 4	D	206	214	anti-parallel
Strand 5	D	151	158	anti-parallel
Strand 6	D	166	171	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	254	259	anti-parallel
Strand 4	D	248	251	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	41	first strand
Strand 2	D	69	75	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	282	283	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	290	first strand
Strand 2	D	295	296	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	7	9	anti-parallel
Strand 3	E	345	346	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	84	92	anti-parallel
Strand 4	E	206	214	anti-parallel
Strand 5	E	151	158	anti-parallel
Strand 6	E	166	171	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	254	259	anti-parallel
Strand 4	E	248	251	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	41	first strand
Strand 2	E	69	75	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	272	first strand
Strand 2	E	282	283	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	290	first strand
Strand 2	E	295	296	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	103	first strand
Strand 2	F	7	9	anti-parallel
Strand 3	F	345	346	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	84	93	anti-parallel
Strand 3	F	18	23	anti-parallel
Strand 4	F	206	214	first strand
Strand 5	F	151	158	anti-parallel
Strand 6	F	166	171	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	31	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	84	93	anti-parallel
Strand 4	F	254	259	first strand
Strand 5	F	248	251	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	72	75	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	272	first strand
Strand 2	F	282	283	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	289	290	first strand
Strand 2	F	295	296	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	9	first strand
Strand 2	H	55	59	anti-parallel
Strand 3	H	41	43	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	102	103	first strand
Strand 2	H	162	168	anti-parallel
Strand 3	H	150	155	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V9Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V9Q