Analysis of interatomic Contacts of Structural Units in PDB entry:
6V9W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V9W entry

There are 4 chains in PDB entry 6V9W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 447	GLU 1079
B	LYS 447	GLU 1079
D	LYS 447	GLU 1079
C	LYS 447	GLU 1079

There are136 helices in PDB entry 6V9W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	447	455	Right-handed alpha
Helix 2	AA2	A	458	466	Right-handed alpha
Helix 3	AA3	A	484	493	Right-handed alpha
Helix 4	AA4	A	494	505	Right-handed alpha
Helix 5	AA5	A	511	515	Right-handed 310
Helix 6	AA6	A	516	525	Right-handed alpha
Helix 7	AA7	A	526	534	Right-handed alpha
Helix 8	AA8	A	550	558	Right-handed alpha
Helix 9	AA9	A	560	570	Right-handed alpha
Helix 10	AB1	A	582	590	Right-handed alpha
Helix 11	AB2	A	592	602	Right-handed alpha
Helix 12	AB3	A	604	610	Right-handed alpha
Helix 13	AB4	A	621	630	Right-handed alpha
Helix 14	AB5	A	630	641	Right-handed alpha
Helix 15	AB6	A	665	669	Right-handed 310
Helix 16	AB7	A	683	692	Right-handed alpha
Helix 17	AB8	A	694	699	Right-handed alpha
Helix 18	AB9	A	700	714	Right-handed alpha
Helix 19	AC1	A	714	740	Right-handed alpha
Helix 20	AC2	A	766	795	Right-handed alpha
Helix 21	AC3	A	798	802	Right-handed 310
Helix 22	AC4	A	803	820	Right-handed alpha
Helix 23	AC5	A	821	823	Right-handed 310
Helix 24	AC6	A	827	850	Right-handed alpha
Helix 25	AC7	A	856	873	Right-handed alpha
Helix 26	AC8	A	873	892	Right-handed alpha
Helix 27	AC9	A	895	899	Right-handed 310
Helix 28	AD1	A	900	911	Right-handed alpha
Helix 29	AD2	A	922	927	Right-handed alpha
Helix 30	AD3	A	933	948	Right-handed alpha
Helix 31	AD4	A	950	968	Right-handed alpha
Helix 32	AD5	A	970	988	Right-handed alpha
Helix 33	AD6	A	991	999	Right-handed alpha
Helix 34	AD7	A	1040	1071	Right-handed alpha
Helix 35	AD8	B	448	455	Right-handed alpha
Helix 36	AD9	B	458	466	Right-handed alpha
Helix 37	AE1	B	484	493	Right-handed alpha
Helix 38	AE2	B	494	505	Right-handed alpha
Helix 39	AE3	B	511	515	Right-handed 310
Helix 40	AE4	B	516	525	Right-handed alpha
Helix 41	AE5	B	526	534	Right-handed alpha
Helix 42	AE6	B	550	558	Right-handed alpha
Helix 43	AE7	B	560	570	Right-handed alpha
Helix 44	AE8	B	582	590	Right-handed alpha
Helix 45	AE9	B	592	602	Right-handed alpha
Helix 46	AF1	B	604	610	Right-handed alpha
Helix 47	AF2	B	621	630	Right-handed alpha
Helix 48	AF3	B	630	641	Right-handed alpha
Helix 49	AF4	B	665	669	Right-handed 310
Helix 50	AF5	B	683	692	Right-handed alpha
Helix 51	AF6	B	694	699	Right-handed alpha
Helix 52	AF7	B	700	714	Right-handed alpha
Helix 53	AF8	B	714	740	Right-handed alpha
Helix 54	AF9	B	766	795	Right-handed alpha
Helix 55	AG1	B	798	802	Right-handed 310
Helix 56	AG2	B	803	820	Right-handed alpha
Helix 57	AG3	B	821	823	Right-handed 310
Helix 58	AG4	B	827	850	Right-handed alpha
Helix 59	AG5	B	856	873	Right-handed alpha
Helix 60	AG6	B	873	892	Right-handed alpha
Helix 61	AG7	B	895	899	Right-handed 310
Helix 62	AG8	B	900	911	Right-handed alpha
Helix 63	AG9	B	922	927	Right-handed alpha
Helix 64	AH1	B	933	948	Right-handed alpha
Helix 65	AH2	B	950	968	Right-handed alpha
Helix 66	AH3	B	970	988	Right-handed alpha
Helix 67	AH4	B	991	999	Right-handed alpha
Helix 68	AH5	B	1040	1071	Right-handed alpha
Helix 69	AH6	D	448	455	Right-handed alpha
Helix 70	AH7	D	458	466	Right-handed alpha
Helix 71	AH8	D	484	493	Right-handed alpha
Helix 72	AH9	D	494	505	Right-handed alpha
Helix 73	AI1	D	511	515	Right-handed 310
Helix 74	AI2	D	516	525	Right-handed alpha
Helix 75	AI3	D	526	534	Right-handed alpha
Helix 76	AI4	D	550	558	Right-handed alpha
Helix 77	AI5	D	560	570	Right-handed alpha
Helix 78	AI6	D	582	590	Right-handed alpha
Helix 79	AI7	D	592	602	Right-handed alpha
Helix 80	AI8	D	604	610	Right-handed alpha
Helix 81	AI9	D	621	630	Right-handed alpha
Helix 82	AJ1	D	630	641	Right-handed alpha
Helix 83	AJ2	D	665	669	Right-handed 310
Helix 84	AJ3	D	683	692	Right-handed alpha
Helix 85	AJ4	D	694	699	Right-handed alpha
Helix 86	AJ5	D	700	714	Right-handed alpha
Helix 87	AJ6	D	714	740	Right-handed alpha
Helix 88	AJ7	D	766	795	Right-handed alpha
Helix 89	AJ8	D	798	802	Right-handed 310
Helix 90	AJ9	D	803	820	Right-handed alpha
Helix 91	AK1	D	821	823	Right-handed 310
Helix 92	AK2	D	827	850	Right-handed alpha
Helix 93	AK3	D	856	873	Right-handed alpha
Helix 94	AK4	D	873	892	Right-handed alpha
Helix 95	AK5	D	895	899	Right-handed 310
Helix 96	AK6	D	900	911	Right-handed alpha
Helix 97	AK7	D	922	927	Right-handed alpha
Helix 98	AK8	D	933	948	Right-handed alpha
Helix 99	AK9	D	950	968	Right-handed alpha
Helix 100	AL1	D	970	988	Right-handed alpha
Helix 101	AL2	D	991	999	Right-handed alpha
Helix 102	AL3	D	1040	1071	Right-handed alpha
Helix 103	AL4	C	448	455	Right-handed alpha
Helix 104	AL5	C	458	466	Right-handed alpha
Helix 105	AL6	C	484	493	Right-handed alpha
Helix 106	AL7	C	494	505	Right-handed alpha
Helix 107	AL8	C	511	515	Right-handed 310
Helix 108	AL9	C	516	525	Right-handed alpha
Helix 109	AM1	C	526	534	Right-handed alpha
Helix 110	AM2	C	550	558	Right-handed alpha
Helix 111	AM3	C	560	570	Right-handed alpha
Helix 112	AM4	C	582	590	Right-handed alpha
Helix 113	AM5	C	592	602	Right-handed alpha
Helix 114	AM6	C	604	610	Right-handed alpha
Helix 115	AM7	C	621	630	Right-handed alpha
Helix 116	AM8	C	630	641	Right-handed alpha
Helix 117	AM9	C	665	669	Right-handed 310
Helix 118	AN1	C	683	692	Right-handed alpha
Helix 119	AN2	C	694	699	Right-handed alpha
Helix 120	AN3	C	700	714	Right-handed alpha
Helix 121	AN4	C	714	740	Right-handed alpha
Helix 122	AN5	C	766	795	Right-handed alpha
Helix 123	AN6	C	798	802	Right-handed 310
Helix 124	AN7	C	803	820	Right-handed alpha
Helix 125	AN8	C	821	823	Right-handed 310
Helix 126	AN9	C	827	850	Right-handed alpha
Helix 127	AO1	C	856	873	Right-handed alpha
Helix 128	AO2	C	873	892	Right-handed alpha
Helix 129	AO3	C	895	899	Right-handed 310
Helix 130	AO4	C	900	911	Right-handed alpha
Helix 131	AO5	C	922	927	Right-handed alpha
Helix 132	AO6	C	933	948	Right-handed alpha
Helix 133	AO7	C	950	968	Right-handed alpha
Helix 134	AO8	C	970	988	Right-handed alpha
Helix 135	AO9	C	991	999	Right-handed alpha
Helix 136	AP1	C	1040	1071	Right-handed alpha

There are 4 sheets in PDB entry 6V9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	643	first strand
Strand 2	A	656	659	anti-parallel
Strand 3	A	1002	1005	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	643	first strand
Strand 2	B	656	659	anti-parallel
Strand 3	B	1002	1005	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	642	643	first strand
Strand 2	D	656	659	anti-parallel
Strand 3	D	1002	1005	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	656	659	anti-parallel
Strand 3	C	1002	1005	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V9W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V9W