Analysis of interatomic Contacts of Structural Units in PDB entry:
6V9Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V9Y entry

There are 4 chains in PDB entry 6V9Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 447	THR 1078
B	LYS 447	THR 1078
D	LYS 447	THR 1078
C	LYS 447	THR 1078

There are132 helices in PDB entry 6V9Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	447	456	Right-handed alpha
Helix 2	AA2	A	458	466	Right-handed alpha
Helix 3	AA3	A	484	492	Right-handed alpha
Helix 4	AA4	A	494	504	Right-handed alpha
Helix 5	AA5	A	511	515	Right-handed 310
Helix 6	AA6	A	516	523	Right-handed alpha
Helix 7	AA7	A	526	535	Right-handed alpha
Helix 8	AA8	A	550	559	Right-handed alpha
Helix 9	AA9	A	560	569	Right-handed alpha
Helix 10	AB1	A	582	590	Right-handed alpha
Helix 11	AB2	A	592	602	Right-handed alpha
Helix 12	AB3	A	605	611	Right-handed alpha
Helix 13	AB4	A	621	630	Right-handed alpha
Helix 14	AB5	A	630	640	Right-handed alpha
Helix 15	AB6	A	683	692	Right-handed alpha
Helix 16	AB7	A	694	699	Right-handed alpha
Helix 17	AB8	A	700	714	Right-handed alpha
Helix 18	AB9	A	714	739	Right-handed alpha
Helix 19	AC1	A	769	786	Right-handed alpha
Helix 20	AC2	A	803	819	Right-handed alpha
Helix 21	AC3	A	820	823	Right-handed 310
Helix 22	AC4	A	827	850	Right-handed alpha
Helix 23	AC5	A	851	853	Right-handed 310
Helix 24	AC6	A	857	872	Right-handed alpha
Helix 25	AC7	A	873	892	Right-handed alpha
Helix 26	AC8	A	895	899	Right-handed 310
Helix 27	AC9	A	903	911	Right-handed alpha
Helix 28	AD1	A	922	927	Right-handed alpha
Helix 29	AD2	A	933	948	Right-handed alpha
Helix 30	AD3	A	950	968	Right-handed alpha
Helix 31	AD4	A	970	988	Right-handed alpha
Helix 32	AD5	A	991	999	Right-handed alpha
Helix 33	AD6	A	1040	1071	Right-handed alpha
Helix 34	AD7	B	448	456	Right-handed alpha
Helix 35	AD8	B	458	466	Right-handed alpha
Helix 36	AD9	B	484	492	Right-handed alpha
Helix 37	AE1	B	494	504	Right-handed alpha
Helix 38	AE2	B	511	515	Right-handed 310
Helix 39	AE3	B	516	523	Right-handed alpha
Helix 40	AE4	B	526	535	Right-handed alpha
Helix 41	AE5	B	550	559	Right-handed alpha
Helix 42	AE6	B	560	569	Right-handed alpha
Helix 43	AE7	B	582	590	Right-handed alpha
Helix 44	AE8	B	592	602	Right-handed alpha
Helix 45	AE9	B	605	611	Right-handed alpha
Helix 46	AF1	B	621	630	Right-handed alpha
Helix 47	AF2	B	630	640	Right-handed alpha
Helix 48	AF3	B	683	692	Right-handed alpha
Helix 49	AF4	B	694	699	Right-handed alpha
Helix 50	AF5	B	700	714	Right-handed alpha
Helix 51	AF6	B	714	739	Right-handed alpha
Helix 52	AF7	B	769	786	Right-handed alpha
Helix 53	AF8	B	803	819	Right-handed alpha
Helix 54	AF9	B	820	823	Right-handed 310
Helix 55	AG1	B	827	850	Right-handed alpha
Helix 56	AG2	B	851	853	Right-handed 310
Helix 57	AG3	B	857	872	Right-handed alpha
Helix 58	AG4	B	873	892	Right-handed alpha
Helix 59	AG5	B	895	899	Right-handed 310
Helix 60	AG6	B	903	911	Right-handed alpha
Helix 61	AG7	B	922	927	Right-handed alpha
Helix 62	AG8	B	933	948	Right-handed alpha
Helix 63	AG9	B	950	968	Right-handed alpha
Helix 64	AH1	B	970	988	Right-handed alpha
Helix 65	AH2	B	991	999	Right-handed alpha
Helix 66	AH3	B	1040	1071	Right-handed alpha
Helix 67	AH4	D	448	456	Right-handed alpha
Helix 68	AH5	D	458	466	Right-handed alpha
Helix 69	AH6	D	484	492	Right-handed alpha
Helix 70	AH7	D	494	504	Right-handed alpha
Helix 71	AH8	D	511	515	Right-handed 310
Helix 72	AH9	D	516	523	Right-handed alpha
Helix 73	AI1	D	526	535	Right-handed alpha
Helix 74	AI2	D	550	559	Right-handed alpha
Helix 75	AI3	D	560	569	Right-handed alpha
Helix 76	AI4	D	582	590	Right-handed alpha
Helix 77	AI5	D	592	602	Right-handed alpha
Helix 78	AI6	D	605	611	Right-handed alpha
Helix 79	AI7	D	621	630	Right-handed alpha
Helix 80	AI8	D	630	640	Right-handed alpha
Helix 81	AI9	D	683	692	Right-handed alpha
Helix 82	AJ1	D	694	699	Right-handed alpha
Helix 83	AJ2	D	700	714	Right-handed alpha
Helix 84	AJ3	D	714	739	Right-handed alpha
Helix 85	AJ4	D	769	786	Right-handed alpha
Helix 86	AJ5	D	803	819	Right-handed alpha
Helix 87	AJ6	D	820	823	Right-handed 310
Helix 88	AJ7	D	827	850	Right-handed alpha
Helix 89	AJ8	D	851	853	Right-handed 310
Helix 90	AJ9	D	857	872	Right-handed alpha
Helix 91	AK1	D	873	892	Right-handed alpha
Helix 92	AK2	D	895	899	Right-handed 310
Helix 93	AK3	D	903	911	Right-handed alpha
Helix 94	AK4	D	922	927	Right-handed alpha
Helix 95	AK5	D	933	948	Right-handed alpha
Helix 96	AK6	D	950	968	Right-handed alpha
Helix 97	AK7	D	970	988	Right-handed alpha
Helix 98	AK8	D	991	999	Right-handed alpha
Helix 99	AK9	D	1040	1071	Right-handed alpha
Helix 100	AL1	C	448	456	Right-handed alpha
Helix 101	AL2	C	458	466	Right-handed alpha
Helix 102	AL3	C	484	492	Right-handed alpha
Helix 103	AL4	C	494	504	Right-handed alpha
Helix 104	AL5	C	511	515	Right-handed 310
Helix 105	AL6	C	516	523	Right-handed alpha
Helix 106	AL7	C	526	535	Right-handed alpha
Helix 107	AL8	C	550	559	Right-handed alpha
Helix 108	AL9	C	560	569	Right-handed alpha
Helix 109	AM1	C	582	590	Right-handed alpha
Helix 110	AM2	C	592	602	Right-handed alpha
Helix 111	AM3	C	605	611	Right-handed alpha
Helix 112	AM4	C	621	630	Right-handed alpha
Helix 113	AM5	C	630	640	Right-handed alpha
Helix 114	AM6	C	683	692	Right-handed alpha
Helix 115	AM7	C	694	699	Right-handed alpha
Helix 116	AM8	C	700	714	Right-handed alpha
Helix 117	AM9	C	714	739	Right-handed alpha
Helix 118	AN1	C	769	786	Right-handed alpha
Helix 119	AN2	C	803	819	Right-handed alpha
Helix 120	AN3	C	820	823	Right-handed 310
Helix 121	AN4	C	827	850	Right-handed alpha
Helix 122	AN5	C	851	853	Right-handed 310
Helix 123	AN6	C	857	872	Right-handed alpha
Helix 124	AN7	C	873	892	Right-handed alpha
Helix 125	AN8	C	895	899	Right-handed 310
Helix 126	AN9	C	903	911	Right-handed alpha
Helix 127	AO1	C	922	927	Right-handed alpha
Helix 128	AO2	C	933	948	Right-handed alpha
Helix 129	AO3	C	950	968	Right-handed alpha
Helix 130	AO4	C	970	988	Right-handed alpha
Helix 131	AO5	C	991	999	Right-handed alpha
Helix 132	AO6	C	1040	1071	Right-handed alpha

There are 4 sheets in PDB entry 6V9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	645	first strand
Strand 2	A	655	659	anti-parallel
Strand 3	A	1002	1005	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	645	first strand
Strand 2	B	655	659	anti-parallel
Strand 3	B	1002	1005	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	642	645	first strand
Strand 2	D	655	659	anti-parallel
Strand 3	D	1002	1005	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	645	first strand
Strand 2	C	655	659	anti-parallel
Strand 3	C	1002	1005	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V9Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V9Y