Analysis of interatomic Contacts of Structural Units in PDB entry:
6V9Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V9Z entry

There are 4 chains in PDB entry 6V9Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8GLU 722
C
 ASN 8GLN 30
B
 LYS 8GLU 722
D
 ASN 8THR 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 6V9Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 34Right-handed alpha
Helix 2
AA2
A
38 47Right-handed alpha
Helix 3
AA3
A
54 66Right-handed alpha
Helix 4
AA4
A
125 132Right-handed alpha
Helix 5
AA5
A
153 158Right-handed alpha
Helix 6
AA6
A
159 163Right-handed 310
Helix 7
AA7
A
165 187Right-handed alpha
Helix 8
AA8
A
188 196Right-handed alpha
Helix 9
AA9
A
196 201Right-handed alpha
Helix 10
AB1
A
203 252Right-handed alpha
Helix 11
AB2
A
254 261Right-handed alpha
Helix 12
AB3
A
263 305Right-handed alpha
Helix 13
AB4
A
305 354Right-handed alpha
Helix 14
AB5
A
354 362Right-handed alpha
Helix 15
AB6
A
363 417Right-handed alpha
Helix 16
AB7
A
421 432Right-handed alpha
Helix 17
AB8
A
432 444Right-handed alpha
Helix 18
AB9
A
445 464Right-handed alpha
Helix 19
AC1
A
468 472Right-handed 310
Helix 20
AC2
A
521 533Right-handed alpha
Helix 21
AC3
A
551 553Right-handed 310
Helix 22
AC4
A
554 561Right-handed alpha
Helix 23
AC5
A
575 581Right-handed alpha
Helix 24
AC6
A
588 600Right-handed alpha
Helix 25
AC7
A
601 606Right-handed alpha
Helix 26
AC8
A
617 621Right-handed 310
Helix 27
AC9
A
624 640Right-handed alpha
Helix 28
AD1
A
656 668Right-handed alpha
Helix 29
AD2
A
680 685Right-handed alpha
Helix 30
AD3
A
703 711Right-handed alpha
Helix 31
AD4
A
712 722Right-handed alpha
Helix 32
AD5
C
14 21Right-handed alpha
Helix 33
AD6
B
21 34Right-handed alpha
Helix 34
AD7
B
38 47Right-handed alpha
Helix 35
AD8
B
55 66Right-handed alpha
Helix 36
AD9
B
125 131Right-handed alpha
Helix 37
AE1
B
153 158Right-handed alpha
Helix 38
AE2
B
159 163Right-handed 310
Helix 39
AE3
B
165 187Right-handed alpha
Helix 40
AE4
B
188 196Right-handed alpha
Helix 41
AE5
B
196 201Right-handed alpha
Helix 42
AE6
B
203 252Right-handed alpha
Helix 43
AE7
B
254 261Right-handed alpha
Helix 44
AE8
B
263 305Right-handed alpha
Helix 45
AE9
B
305 354Right-handed alpha
Helix 46
AF1
B
354 362Right-handed alpha
Helix 47
AF2
B
363 417Right-handed alpha
Helix 48
AF3
B
421 432Right-handed alpha
Helix 49
AF4
B
432 444Right-handed alpha
Helix 50
AF5
B
445 464Right-handed alpha
Helix 51
AF6
B
468 472Right-handed 310
Helix 52
AF7
B
521 533Right-handed alpha
Helix 53
AF8
B
551 553Right-handed 310
Helix 54
AF9
B
554 561Right-handed alpha
Helix 55
AG1
B
575 581Right-handed alpha
Helix 56
AG2
B
588 600Right-handed alpha
Helix 57
AG3
B
601 606Right-handed alpha
Helix 58
AG4
B
617 621Right-handed 310
Helix 59
AG5
B
624 640Right-handed alpha
Helix 60
AG6
B
656 668Right-handed alpha
Helix 61
AG7
B
680 685Right-handed alpha
Helix 62
AG8
B
703 711Right-handed alpha
Helix 63
AG9
B
712 722Right-handed alpha
Helix 64
AH1
D
14 21Right-handed alpha
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There are 9 sheets in PDB entry 6V9Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
148 149parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 73first strand
Strand 2
A
135 141anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
97 106anti-parallel
Strand 5
A
110 113anti-parallel
Strand 6
A
121 124anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 509first strand
Strand 2
A
486 489anti-parallel
Strand 3
A
542 545anti-parallel
Strand 4
A
548 549anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 565first strand
Strand 2
A
643 646parallel
Strand 3
A
673 676parallel
Strand 4
A
514 519parallel
Strand 5
A
690 694parallel
Strand 6
A
697 698anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
148 149parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
D
22 23anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
110 113anti-parallel
Strand 3
B
97 106anti-parallel
Strand 4
B
87 93anti-parallel
Strand 5
B
132 141anti-parallel
Strand 6
B
67 73anti-parallel
Strand 7
D
11 12anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
506 509first strand
Strand 2
B
486 489anti-parallel
Strand 3
B
542 545anti-parallel
Strand 4
B
548 549anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
562 565first strand
Strand 2
B
643 646parallel
Strand 3
B
673 676parallel
Strand 4
B
514 519parallel
Strand 5
B
690 694parallel
Strand 6
B
697 698anti-parallel
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