Analysis of interatomic Contacts of Structural Units in PDB entry:
6VA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VA8 entry

There is 1 chain in PDB entry 6VA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29GLN 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6VA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 47Right-handed alpha
Helix 2
AA2
A
47 58Right-handed alpha
Helix 3
AA3
A
76 85Right-handed alpha
Helix 4
AA4
A
86 89Right-handed 310
Helix 5
AA5
A
91 93Right-handed 310
Helix 6
AA6
A
94 104Right-handed alpha
Helix 7
AA7
A
114 128Right-handed alpha
Helix 8
AA8
A
143 145Right-handed 310
Helix 9
AA9
A
146 158Right-handed alpha
Helix 10
AB1
A
176 189Right-handed alpha
Helix 11
AB2
A
192 194Right-handed 310
Helix 12
AB3
A
206 221Right-handed alpha
Helix 13
AB4
A
246 252Right-handed alpha
Helix 14
AB5
A
254 259Right-handed alpha
Helix 15
AB6
A
262 273Right-handed alpha
Helix 16
AB7
A
280 293Right-handed alpha
Helix 17
AB8
A
299 301Right-handed 310
Helix 18
AB9
A
315 319Right-handed 310
Helix 19
AC1
A
436 447Right-handed alpha
Helix 20
AC2
A
454 476Right-handed alpha
Helix 21
AC3
A
489 500Right-handed alpha
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There are 2 sheets in PDB entry 6VA8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
64 71parallel
Strand 3
A
31 37parallel
Strand 4
A
135 140parallel
Strand 5
A
165 169parallel
Strand 6
A
196 198parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 393first strand
Strand 2
A
367 373anti-parallel
Strand 3
A
230 238anti-parallel
Strand 4
A
353 359parallel
Strand 5
A
337 343anti-parallel
Strand 6
A
303 309anti-parallel
Strand 7
A
480 483parallel
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