Analysis of interatomic Contacts of Structural Units in PDB entry:
6VAC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VAC entry

There are 3 chains in PDB entry 6VAC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 15ARG 780
B
 PHE 8GLU 300
C
 LEU 2SER 182
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6VAC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 36Right-handed alpha
Helix 2
AA2
A
38 51Right-handed alpha
Helix 3
AA3
A
52 55Right-handed 310
Helix 4
AA4
A
59 87Right-handed alpha
Helix 5
AA5
A
93 98Right-handed alpha
Helix 6
AA6
A
103 121Right-handed alpha
Helix 7
AA7
A
122 124Right-handed 310
Helix 8
AA8
A
125 137Right-handed alpha
Helix 9
AA9
A
138 140Right-handed 310
Helix 10
AB1
A
142 157Right-handed alpha
Helix 11
AB2
A
175 199Right-handed alpha
Helix 12
AB3
A
205 214Right-handed alpha
Helix 13
AB4
A
216 229Right-handed alpha
Helix 14
AB5
A
234 240Right-handed alpha
Helix 15
AB6
A
243 252Right-handed alpha
Helix 16
AB7
A
255 270Right-handed alpha
Helix 17
AB8
A
271 275Right-handed 310
Helix 18
AB9
A
276 277Right-handed 310
Helix 19
AC1
A
278 288Right-handed alpha
Helix 20
AC2
A
295 303Right-handed alpha
Helix 21
AC3
A
303 312Right-handed alpha
Helix 22
AC4
A
323 339Right-handed alpha
Helix 23
AC5
A
344 362Right-handed alpha
Helix 24
AC6
A
365 383Right-handed alpha
Helix 25
AC7
A
392 409Right-handed alpha
Helix 26
AC8
A
412 417Right-handed alpha
Helix 27
AC9
A
420 425Right-handed alpha
Helix 28
AD1
A
429 447Right-handed alpha
Helix 29
AD2
A
453 469Right-handed alpha
Helix 30
AD3
A
485 498Right-handed alpha
Helix 31
AD4
A
502 521Right-handed alpha
Helix 32
AD5
A
524 544Right-handed alpha
Helix 33
AD6
A
552 574Right-handed alpha
Helix 34
AD7
A
577 595Right-handed alpha
Helix 35
AD8
A
599 617Right-handed alpha
Helix 36
AD9
A
620 637Right-handed alpha
Helix 37
AE1
A
642 660Right-handed alpha
Helix 38
AE2
A
662 676Right-handed alpha
Helix 39
AE3
A
696 708Right-handed alpha
Helix 40
AE4
A
713 732Right-handed alpha
Helix 41
AE5
A
740 754Right-handed alpha
Helix 42
AE6
A
762 777Right-handed alpha
Helix 43
AE7
B
81 85Right-handed 310
Helix 44
AE8
B
263 266Right-handed 310
Helix 45
AE9
C
19 26Right-handed alpha
Helix 46
AF1
C
42 53Right-handed alpha
Helix 47
AF2
C
98 107Right-handed alpha
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There are 13 sheets in PDB entry 6VAC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 18first strand
Strand 2
B
49 56anti-parallel
Strand 3
B
106 110anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
100 101anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 89first strand
Strand 2
B
68 78anti-parallel
Strand 3
B
92 96anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 89first strand
Strand 2
B
68 78anti-parallel
Strand 3
B
126 136anti-parallel
Strand 4
B
143 149anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 166first strand
Strand 2
B
178 180anti-parallel
Strand 3
B
190 196anti-parallel
Strand 4
B
245 251anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
174 175anti-parallel
Strand 3
B
199 200anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 186first strand
Strand 2
B
289 295parallel
Strand 3
B
268 276anti-parallel
Strand 4
B
209 219anti-parallel
Strand 5
B
222 224anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 186first strand
Strand 2
B
289 295parallel
Strand 3
B
268 276anti-parallel
Strand 4
B
209 219anti-parallel
Strand 5
B
231 232anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 279first strand
Strand 2
B
285 286anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
33 36parallel
Strand 3
C
55 58parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 77first strand
Strand 2
C
80 85anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 112first strand
Strand 2
C
127 131parallel
Strand 3
C
120 124anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 152first strand
Strand 2
C
159 168anti-parallel
Strand 3
C
171 180anti-parallel
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