Analysis of interatomic Contacts of Structural Units in PDB entry:
6VAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VAD entry

There is 1 chain in PDB entry 6VAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 665
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are126 helices in PDB entry 6VAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 12Right-handed alpha
Helix 2
AA2
A
16 22Right-handed alpha
Helix 3
AA3
A
28 39Right-handed alpha
Helix 4
AA4
A
39 54Right-handed alpha
Helix 5
AA5
A
59 78Right-handed alpha
Helix 6
AA6
A
82 97Right-handed alpha
Helix 7
AA7
A
101 118Right-handed alpha
Helix 8
AA8
A
124 127Right-handed 310
Helix 9
AA9
A
128 140Right-handed alpha
Helix 10
AB1
A
152 167Right-handed alpha
Helix 11
AB2
A
174 181Right-handed alpha
Helix 12
AB3
A
187 201Right-handed alpha
Helix 13
AB4
A
206 209Right-handed 310
Helix 14
AB5
A
210 222Right-handed alpha
Helix 15
AB6
A
225 249Right-handed alpha
Helix 16
AB7
A
263 282Right-handed alpha
Helix 17
AB8
A
284 293Right-handed alpha
Helix 18
AB9
A
306 316Right-handed alpha
Helix 19
AC1
A
317 319Right-handed 310
Helix 20
AC2
A
322 346Right-handed alpha
Helix 21
AC3
A
348 354Right-handed alpha
Helix 22
AC4
A
359 371Right-handed alpha
Helix 23
AC5
A
378 394Right-handed alpha
Helix 24
AC6
A
412 433Right-handed alpha
Helix 25
AC7
A
436 449Right-handed alpha
Helix 26
AC8
A
456 470Right-handed alpha
Helix 27
AC9
A
484 488Right-handed 310
Helix 28
AD1
A
492 510Right-handed alpha
Helix 29
AD2
A
510 524Right-handed alpha
Helix 30
AD3
A
530 547Right-handed alpha
Helix 31
AD4
A
578 595Right-handed alpha
Helix 32
AD5
A
598 616Right-handed alpha
Helix 33
AD6
A
619 633Right-handed alpha
Helix 34
AD7
A
663 682Right-handed alpha
Helix 35
AD8
A
698 715Right-handed alpha
Helix 36
AD9
A
733 761Right-handed alpha
Helix 37
AE1
A
764 792Right-handed alpha
Helix 38
AE2
A
806 819Right-handed alpha
Helix 39
AE3
A
822 834Right-handed alpha
Helix 40
AE4
A
835 856Right-handed alpha
Helix 41
AE5
A
866 887Right-handed alpha
Helix 42
AE6
A
896 901Right-handed 310
Helix 43
AE7
A
903 923Right-handed alpha
Helix 44
AE8
A
926 932Right-handed alpha
Helix 45
AE9
A
950 972Right-handed alpha
Helix 46
AF1
A
978 993Right-handed alpha
Helix 47
AF2
A
1000 1017Right-handed alpha
Helix 48
AF3
A
1021 1038Right-handed alpha
Helix 49
AF4
A
1042 1058Right-handed alpha
Helix 50
AF5
A
1083 1110Right-handed alpha
Helix 51
AF6
A
1127 1150Right-handed alpha
Helix 52
AF7
A
1156 1184Right-handed alpha
Helix 53
AF8
A
1191 1204Right-handed alpha
Helix 54
AF9
A
1204 1219Right-handed alpha
Helix 55
AG1
A
1248 1271Right-handed alpha
Helix 56
AG2
B
46 56Right-handed alpha
Helix 57
AG3
B
71 86Right-handed alpha
Helix 58
AG4
B
88 104Right-handed alpha
Helix 59
AG5
B
106 115Right-handed alpha
Helix 60
AG6
B
134 141Right-handed alpha
Helix 61
AG7
B
145 155Right-handed alpha
Helix 62
AG8
B
156 161Right-handed 310
Helix 63
AG9
B
171 179Right-handed alpha
Helix 64
AH1
B
189 203Right-handed alpha
Helix 65
AH2
B
204 214Right-handed alpha
Helix 66
AH3
B
214 219Right-handed alpha
Helix 67
AH4
B
223 238Right-handed alpha
Helix 68
AH5
B
241 252Right-handed alpha
Helix 69
AH6
B
255 269Right-handed alpha
Helix 70
AH7
B
270 273Right-handed 310
Helix 71
AH8
B
274 276Right-handed 310
Helix 72
AH9
B
277 288Right-handed alpha
Helix 73
AI1
B
293 305Right-handed alpha
Helix 74
AI2
B
339 356Right-handed alpha
Helix 75
AI3
B
358 370Right-handed alpha
Helix 76
AI4
B
378 391Right-handed alpha
Helix 77
AI5
B
395 408Right-handed alpha
Helix 78
AI6
B
413 424Right-handed alpha
Helix 79
AI7
B
428 430Right-handed 310
Helix 80
AI8
B
431 440Right-handed alpha
Helix 81
AI9
B
447 465Right-handed alpha
Helix 82
AJ1
B
466 484Right-handed alpha
Helix 83
AJ2
B
485 503Right-handed alpha
Helix 84
AJ3
B
503 509Right-handed alpha
Helix 85
AJ4
B
510 516Right-handed alpha
Helix 86
AJ5
B
517 521Right-handed 310
Helix 87
AJ6
B
525 541Right-handed alpha
Helix 88
AJ7
B
542 546Right-handed 310
Helix 89
AJ8
B
549 564Right-handed alpha
Helix 90
AJ9
B
567 586Right-handed alpha
Helix 91
AK1
B
605 623Right-handed alpha
Helix 92
AK2
B
625 642Right-handed alpha
Helix 93
AK3
B
647 664Right-handed alpha
Helix 94
AK4
B
699 707Right-handed alpha
Helix 95
AK5
B
729 746Right-handed alpha
Helix 96
AK6
B
752 758Right-handed alpha
Helix 97
AK7
B
776 801Right-handed alpha
Helix 98
AK8
B
805 833Right-handed alpha
Helix 99
AK9
B
845 851Right-handed alpha
Helix 100
AL1
B
917 924Right-handed alpha
Helix 101
AL2
B
929 938Right-handed 310
Helix 102
AL3
B
962 981Right-handed alpha
Helix 103
AL4
B
1002 1006Right-handed alpha
Helix 104
AL5
B
1008 1020Right-handed alpha
Helix 105
AL6
B
1020 1042Right-handed alpha
Helix 106
AL7
B
1052 1074Right-handed alpha
Helix 107
AL8
B
1075 1079Right-handed 310
Helix 108
AL9
B
1083 1096Right-handed alpha
Helix 109
AM1
B
1106 1120Right-handed alpha
Helix 110
AM2
B
1121 1124Right-handed 310
Helix 111
AM3
B
1128 1143Right-handed alpha
Helix 112
AM4
B
1144 1145Right-handed 310
Helix 113
AM5
B
1150 1150Right-handed 310
Helix 114
AM6
B
1151 1165Right-handed alpha
Helix 115
AM7
B
1170 1176Right-handed alpha
Helix 116
AM8
B
1178 1193Right-handed alpha
Helix 117
AM9
B
1195 1208Right-handed alpha
Helix 118
AN1
B
1209 1214Right-handed alpha
Helix 119
AN2
B
1230 1249Right-handed alpha
Helix 120
AN3
B
1257 1281Right-handed alpha
Helix 121
AN4
B
1282 1284Right-handed 310
Helix 122
AN5
B
1288 1309Right-handed alpha
Helix 123
AN6
B
1309 1316Right-handed alpha
Helix 124
AN7
B
1320 1348Right-handed alpha
Helix 125
AN8
B
1352 1355Right-handed 310
Helix 126
AN9
B
1356 1376Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6VAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
651 654first strand
Strand 2
A
657 660anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
67 68anti-parallel
Strand 3
B
118 119parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
665 667first strand
Strand 2
B
695 698anti-parallel
Strand 3
B
760 762parallel
Strand 4
B
681 683anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il