Analysis of interatomic Contacts of Structural Units in PDB entry:
6VAF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VAF entry

There is 1 chain in PDB entry 6VAF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 667

There are126 helices in PDB entry 6VAF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	7	Right-handed alpha
Helix 2	AA2	A	16	25	Right-handed alpha
Helix 3	AA3	A	29	39	Right-handed alpha
Helix 4	AA4	A	39	54	Right-handed alpha
Helix 5	AA5	A	58	79	Right-handed alpha
Helix 6	AA6	A	82	96	Right-handed alpha
Helix 7	AA7	A	101	103	Right-handed 310
Helix 8	AA8	A	104	118	Right-handed alpha
Helix 9	AA9	A	124	127	Right-handed 310
Helix 10	AB1	A	128	140	Right-handed alpha
Helix 11	AB2	A	152	167	Right-handed alpha
Helix 12	AB3	A	170	172	Right-handed 310
Helix 13	AB4	A	173	184	Right-handed alpha
Helix 14	AB5	A	187	201	Right-handed alpha
Helix 15	AB6	A	202	205	Right-handed 310
Helix 16	AB7	A	209	222	Right-handed alpha
Helix 17	AB8	A	226	249	Right-handed alpha
Helix 18	AB9	A	263	280	Right-handed alpha
Helix 19	AC1	A	283	294	Right-handed alpha
Helix 20	AC2	A	297	303	Right-handed 310
Helix 21	AC3	A	306	317	Right-handed alpha
Helix 22	AC4	A	324	346	Right-handed alpha
Helix 23	AC5	A	348	354	Right-handed alpha
Helix 24	AC6	A	359	371	Right-handed alpha
Helix 25	AC7	A	372	374	Right-handed 310
Helix 26	AC8	A	376	393	Right-handed alpha
Helix 27	AC9	A	412	415	Right-handed 310
Helix 28	AD1	A	416	433	Right-handed alpha
Helix 29	AD2	A	436	451	Right-handed alpha
Helix 30	AD3	A	456	470	Right-handed alpha
Helix 31	AD4	A	471	476	Right-handed 310
Helix 32	AD5	A	477	488	Right-handed alpha
Helix 33	AD6	A	492	504	Right-handed alpha
Helix 34	AD7	A	511	525	Right-handed alpha
Helix 35	AD8	A	529	547	Right-handed alpha
Helix 36	AD9	A	577	595	Right-handed alpha
Helix 37	AE1	A	598	616	Right-handed alpha
Helix 38	AE2	A	619	633	Right-handed alpha
Helix 39	AE3	A	663	682	Right-handed alpha
Helix 40	AE4	A	697	715	Right-handed alpha
Helix 41	AE5	A	733	761	Right-handed alpha
Helix 42	AE6	A	764	790	Right-handed alpha
Helix 43	AE7	A	806	819	Right-handed alpha
Helix 44	AE8	A	822	835	Right-handed alpha
Helix 45	AE9	A	835	856	Right-handed alpha
Helix 46	AF1	A	866	888	Right-handed alpha
Helix 47	AF2	A	889	893	Right-handed 310
Helix 48	AF3	A	898	902	Right-handed 310
Helix 49	AF4	A	903	923	Right-handed alpha
Helix 50	AF5	A	926	933	Right-handed alpha
Helix 51	AF6	A	951	973	Right-handed alpha
Helix 52	AF7	A	978	994	Right-handed alpha
Helix 53	AF8	A	1000	1017	Right-handed alpha
Helix 54	AF9	A	1021	1040	Right-handed alpha
Helix 55	AG1	A	1043	1058	Right-handed alpha
Helix 56	AG2	A	1068	1072	Right-handed 310
Helix 57	AG3	A	1076	1081	Right-handed alpha
Helix 58	AG4	A	1083	1110	Right-handed alpha
Helix 59	AG5	A	1127	1150	Right-handed alpha
Helix 60	AG6	A	1156	1188	Right-handed alpha
Helix 61	AG7	A	1191	1204	Right-handed alpha
Helix 62	AG8	A	1205	1219	Right-handed alpha
Helix 63	AG9	A	1235	1248	Right-handed alpha
Helix 64	AH1	A	1248	1270	Right-handed alpha
Helix 65	AH2	A	1274	1278	Right-handed 310
Helix 66	AH3	B	46	56	Right-handed alpha
Helix 67	AH4	B	71	86	Right-handed alpha
Helix 68	AH5	B	91	104	Right-handed alpha
Helix 69	AH6	B	106	115	Right-handed alpha
Helix 70	AH7	B	135	141	Right-handed alpha
Helix 71	AH8	B	145	157	Right-handed alpha
Helix 72	AH9	B	158	160	Right-handed 310
Helix 73	AI1	B	171	178	Right-handed alpha
Helix 74	AI2	B	188	203	Right-handed alpha
Helix 75	AI3	B	204	213	Right-handed alpha
Helix 76	AI4	B	223	238	Right-handed alpha
Helix 77	AI5	B	242	251	Right-handed alpha
Helix 78	AI6	B	255	268	Right-handed alpha
Helix 79	AI7	B	277	287	Right-handed alpha
Helix 80	AI8	B	293	305	Right-handed alpha
Helix 81	AI9	B	338	355	Right-handed alpha
Helix 82	AJ1	B	357	370	Right-handed alpha
Helix 83	AJ2	B	378	392	Right-handed alpha
Helix 84	AJ3	B	395	409	Right-handed alpha
Helix 85	AJ4	B	413	424	Right-handed alpha
Helix 86	AJ5	B	425	430	Right-handed alpha
Helix 87	AJ6	B	431	444	Right-handed alpha
Helix 88	AJ7	B	447	465	Right-handed alpha
Helix 89	AJ8	B	466	484	Right-handed alpha
Helix 90	AJ9	B	486	503	Right-handed alpha
Helix 91	AK1	B	503	509	Right-handed alpha
Helix 92	AK2	B	510	516	Right-handed alpha
Helix 93	AK3	B	520	524	Right-handed 310
Helix 94	AK4	B	525	541	Right-handed alpha
Helix 95	AK5	B	542	547	Right-handed 310
Helix 96	AK6	B	549	565	Right-handed alpha
Helix 97	AK7	B	567	586	Right-handed alpha
Helix 98	AK8	B	605	622	Right-handed alpha
Helix 99	AK9	B	624	642	Right-handed alpha
Helix 100	AL1	B	645	664	Right-handed alpha
Helix 101	AL2	B	698	707	Right-handed alpha
Helix 102	AL3	B	729	746	Right-handed alpha
Helix 103	AL4	B	776	800	Right-handed alpha
Helix 104	AL5	B	805	833	Right-handed alpha
Helix 105	AL6	B	917	923	Right-handed alpha
Helix 106	AL7	B	930	938	Right-handed 310
Helix 107	AL8	B	961	981	Right-handed alpha
Helix 108	AL9	B	1002	1006	Right-handed alpha
Helix 109	AM1	B	1008	1036	Right-handed alpha
Helix 110	AM2	B	1052	1074	Right-handed alpha
Helix 111	AM3	B	1083	1096	Right-handed alpha
Helix 112	AM4	B	1106	1120	Right-handed alpha
Helix 113	AM5	B	1127	1143	Right-handed alpha
Helix 114	AM6	B	1144	1145	Right-handed 310
Helix 115	AM7	B	1150	1150	Right-handed 310
Helix 116	AM8	B	1151	1165	Right-handed alpha
Helix 117	AM9	B	1178	1191	Right-handed alpha
Helix 118	AN1	B	1195	1205	Right-handed alpha
Helix 119	AN2	B	1208	1213	Right-handed alpha
Helix 120	AN3	B	1230	1248	Right-handed alpha
Helix 121	AN4	B	1257	1281	Right-handed alpha
Helix 122	AN5	B	1288	1316	Right-handed alpha
Helix 123	AN6	B	1321	1348	Right-handed alpha
Helix 124	AN7	B	1350	1355	Right-handed alpha
Helix 125	AN8	B	1356	1379	Right-handed alpha
Helix 126	AN9	D	22	34	Right-handed alpha

There are 6 sheets in PDB entry 6VAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	654	first strand
Strand 2	A	657	660	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1285	1288	first strand
Strand 2	B	1385	1388	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	116	119	parallel
Strand 3	B	131	134	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	665	666	first strand
Strand 2	B	696	697	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	683	first strand
Strand 2	B	760	762	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	16	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	66	71	parallel
Strand 4	D	41	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VAF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VAF