Analysis of interatomic Contacts of Structural Units in PDB entry:
6VAI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VAI entry

There are 22 chains in PDB entry 6VAI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 25ALA 303
B
 ASN 25ALA 303
C
 ASN 25ALA 303
D
 ASN 25ALA 303
E
 ASN 25ALA 303
F
 ASN 25ALA 303
G
 ASN 25ALA 303
H
 ASN 25ALA 303
I
 ASN 25ALA 303
J
 ASN 25ALA 303
K
 ASN 25ALA 303
L
 ASN 25ALA 303
M
 ASN 25ALA 303
N
 ASN 25ALA 303
O
 ASN 25ALA 303
P
 ASN 25ALA 303
Q
 ASN 25ALA 303
R
 ASN 25ALA 303
S
 ASN 25ALA 303
T
 ASN 25ALA 303
U
 ASN 25ALA 303
V
 ASN 25ALA 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are242 helices in PDB entry 6VAI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 40Right-handed alpha
Helix 2
AA2
A
51 75Right-handed alpha
Helix 3
AA3
A
76 86Right-handed alpha
Helix 4
AA4
A
100 111Right-handed alpha
Helix 5
AA5
A
111 125Right-handed alpha
Helix 6
AA6
A
156 160Right-handed 310
Helix 7
AA7
A
166 209Right-handed alpha
Helix 8
AA8
A
214 252Right-handed alpha
Helix 9
AA9
A
257 267Right-handed alpha
Helix 10
AB1
A
274 282Right-handed alpha
Helix 11
AB2
A
297 302Right-handed alpha
Helix 12
AB3
B
26 40Right-handed alpha
Helix 13
AB4
B
51 75Right-handed alpha
Helix 14
AB5
B
76 86Right-handed alpha
Helix 15
AB6
B
100 111Right-handed alpha
Helix 16
AB7
B
111 125Right-handed alpha
Helix 17
AB8
B
156 160Right-handed 310
Helix 18
AB9
B
166 209Right-handed alpha
Helix 19
AC1
B
214 252Right-handed alpha
Helix 20
AC2
B
257 267Right-handed alpha
Helix 21
AC3
B
274 282Right-handed alpha
Helix 22
AC4
B
297 302Right-handed alpha
Helix 23
AC5
C
26 40Right-handed alpha
Helix 24
AC6
C
51 75Right-handed alpha
Helix 25
AC7
C
76 86Right-handed alpha
Helix 26
AC8
C
100 111Right-handed alpha
Helix 27
AC9
C
111 125Right-handed alpha
Helix 28
AD1
C
156 160Right-handed 310
Helix 29
AD2
C
166 209Right-handed alpha
Helix 30
AD3
C
214 252Right-handed alpha
Helix 31
AD4
C
257 267Right-handed alpha
Helix 32
AD5
C
274 282Right-handed alpha
Helix 33
AD6
C
297 302Right-handed alpha
Helix 34
AD7
D
26 40Right-handed alpha
Helix 35
AD8
D
51 75Right-handed alpha
Helix 36
AD9
D
76 86Right-handed alpha
Helix 37
AE1
D
100 111Right-handed alpha
Helix 38
AE2
D
111 125Right-handed alpha
Helix 39
AE3
D
156 160Right-handed 310
Helix 40
AE4
D
166 209Right-handed alpha
Helix 41
AE5
D
214 252Right-handed alpha
Helix 42
AE6
D
257 267Right-handed alpha
Helix 43
AE7
D
274 282Right-handed alpha
Helix 44
AE8
D
297 302Right-handed alpha
Helix 45
AE9
E
26 40Right-handed alpha
Helix 46
AF1
E
51 75Right-handed alpha
Helix 47
AF2
E
76 86Right-handed alpha
Helix 48
AF3
E
100 111Right-handed alpha
Helix 49
AF4
E
111 125Right-handed alpha
Helix 50
AF5
E
156 160Right-handed 310
Helix 51
AF6
E
166 209Right-handed alpha
Helix 52
AF7
E
214 252Right-handed alpha
Helix 53
AF8
E
257 267Right-handed alpha
Helix 54
AF9
E
274 282Right-handed alpha
Helix 55
AG1
E
297 302Right-handed alpha
Helix 56
AG2
F
26 40Right-handed alpha
Helix 57
AG3
F
51 75Right-handed alpha
Helix 58
AG4
F
76 86Right-handed alpha
Helix 59
AG5
F
100 111Right-handed alpha
Helix 60
AG6
F
111 125Right-handed alpha
Helix 61
AG7
F
156 160Right-handed 310
Helix 62
AG8
F
166 209Right-handed alpha
Helix 63
AG9
F
214 252Right-handed alpha
Helix 64
AH1
F
257 267Right-handed alpha
Helix 65
AH2
F
274 282Right-handed alpha
Helix 66
AH3
F
297 302Right-handed alpha
Helix 67
AH4
G
26 40Right-handed alpha
Helix 68
AH5
G
51 75Right-handed alpha
Helix 69
AH6
G
76 86Right-handed alpha
Helix 70
AH7
G
100 111Right-handed alpha
Helix 71
AH8
G
111 125Right-handed alpha
Helix 72
AH9
G
156 160Right-handed 310
Helix 73
AI1
G
166 209Right-handed alpha
Helix 74
AI2
G
214 252Right-handed alpha
Helix 75
AI3
G
257 267Right-handed alpha
Helix 76
AI4
G
274 282Right-handed alpha
Helix 77
AI5
G
297 302Right-handed alpha
Helix 78
AI6
H
26 40Right-handed alpha
Helix 79
AI7
H
51 75Right-handed alpha
Helix 80
AI8
H
76 86Right-handed alpha
Helix 81
AI9
H
100 111Right-handed alpha
Helix 82
AJ1
H
111 125Right-handed alpha
Helix 83
AJ2
H
156 160Right-handed 310
Helix 84
AJ3
H
166 209Right-handed alpha
Helix 85
AJ4
H
214 252Right-handed alpha
Helix 86
AJ5
H
257 267Right-handed alpha
Helix 87
AJ6
H
274 282Right-handed alpha
Helix 88
AJ7
H
297 302Right-handed alpha
Helix 89
AJ8
I
26 40Right-handed alpha
Helix 90
AJ9
I
51 75Right-handed alpha
Helix 91
AK1
I
76 86Right-handed alpha
Helix 92
AK2
I
100 111Right-handed alpha
Helix 93
AK3
I
111 125Right-handed alpha
Helix 94
AK4
I
156 160Right-handed 310
Helix 95
AK5
I
166 209Right-handed alpha
Helix 96
AK6
I
214 252Right-handed alpha
Helix 97
AK7
I
257 267Right-handed alpha
Helix 98
AK8
I
274 282Right-handed alpha
Helix 99
AK9
I
297 302Right-handed alpha
Helix 100
AL1
J
26 40Right-handed alpha
Helix 101
AL2
J
51 75Right-handed alpha
Helix 102
AL3
J
76 86Right-handed alpha
Helix 103
AL4
J
100 111Right-handed alpha
Helix 104
AL5
J
111 125Right-handed alpha
Helix 105
AL6
J
156 160Right-handed 310
Helix 106
AL7
J
166 209Right-handed alpha
Helix 107
AL8
J
214 252Right-handed alpha
Helix 108
AL9
J
257 267Right-handed alpha
Helix 109
AM1
J
274 282Right-handed alpha
Helix 110
AM2
J
297 302Right-handed alpha
Helix 111
AM3
K
26 40Right-handed alpha
Helix 112
AM4
K
51 75Right-handed alpha
Helix 113
AM5
K
76 86Right-handed alpha
Helix 114
AM6
K
100 111Right-handed alpha
Helix 115
AM7
K
111 125Right-handed alpha
Helix 116
AM8
K
156 160Right-handed 310
Helix 117
AM9
K
166 209Right-handed alpha
Helix 118
AN1
K
214 252Right-handed alpha
Helix 119
AN2
K
257 267Right-handed alpha
Helix 120
AN3
K
274 282Right-handed alpha
Helix 121
AN4
K
297 302Right-handed alpha
Helix 122
AN5
L
26 40Right-handed alpha
Helix 123
AN6
L
51 75Right-handed alpha
Helix 124
AN7
L
76 86Right-handed alpha
Helix 125
AN8
L
100 111Right-handed alpha
Helix 126
AN9
L
111 125Right-handed alpha
Helix 127
AO1
L
156 160Right-handed 310
Helix 128
AO2
L
166 209Right-handed alpha
Helix 129
AO3
L
214 252Right-handed alpha
Helix 130
AO4
L
257 267Right-handed alpha
Helix 131
AO5
L
274 282Right-handed alpha
Helix 132
AO6
L
297 302Right-handed alpha
Helix 133
AO7
M
26 40Right-handed alpha
Helix 134
AO8
M
51 75Right-handed alpha
Helix 135
AO9
M
76 86Right-handed alpha
Helix 136
AP1
M
100 111Right-handed alpha
Helix 137
AP2
M
111 125Right-handed alpha
Helix 138
AP3
M
156 160Right-handed 310
Helix 139
AP4
M
166 209Right-handed alpha
Helix 140
AP5
M
214 252Right-handed alpha
Helix 141
AP6
M
257 267Right-handed alpha
Helix 142
AP7
M
274 282Right-handed alpha
Helix 143
AP8
M
297 302Right-handed alpha
Helix 144
AP9
N
26 40Right-handed alpha
Helix 145
AQ1
N
51 75Right-handed alpha
Helix 146
AQ2
N
76 86Right-handed alpha
Helix 147
AQ3
N
100 111Right-handed alpha
Helix 148
AQ4
N
111 125Right-handed alpha
Helix 149
AQ5
N
156 160Right-handed 310
Helix 150
AQ6
N
166 209Right-handed alpha
Helix 151
AQ7
N
214 252Right-handed alpha
Helix 152
AQ8
N
257 267Right-handed alpha
Helix 153
AQ9
N
274 282Right-handed alpha
Helix 154
AR1
N
297 302Right-handed alpha
Helix 155
AR2
O
26 40Right-handed alpha
Helix 156
AR3
O
51 75Right-handed alpha
Helix 157
AR4
O
76 86Right-handed alpha
Helix 158
AR5
O
100 111Right-handed alpha
Helix 159
AR6
O
111 125Right-handed alpha
Helix 160
AR7
O
156 160Right-handed 310
Helix 161
AR8
O
166 209Right-handed alpha
Helix 162
AR9
O
214 252Right-handed alpha
Helix 163
AS1
O
257 267Right-handed alpha
Helix 164
AS2
O
274 282Right-handed alpha
Helix 165
AS3
O
297 302Right-handed alpha
Helix 166
AS4
P
26 40Right-handed alpha
Helix 167
AS5
P
51 75Right-handed alpha
Helix 168
AS6
P
76 86Right-handed alpha
Helix 169
AS7
P
100 111Right-handed alpha
Helix 170
AS8
P
111 125Right-handed alpha
Helix 171
AS9
P
156 160Right-handed 310
Helix 172
AT1
P
166 209Right-handed alpha
Helix 173
AT2
P
214 252Right-handed alpha
Helix 174
AT3
P
257 267Right-handed alpha
Helix 175
AT4
P
274 282Right-handed alpha
Helix 176
AT5
P
297 302Right-handed alpha
Helix 177
AT6
Q
26 40Right-handed alpha
Helix 178
AT7
Q
51 75Right-handed alpha
Helix 179
AT8
Q
76 86Right-handed alpha
Helix 180
AT9
Q
100 111Right-handed alpha
Helix 181
AU1
Q
111 125Right-handed alpha
Helix 182
AU2
Q
156 160Right-handed 310
Helix 183
AU3
Q
166 209Right-handed alpha
Helix 184
AU4
Q
214 252Right-handed alpha
Helix 185
AU5
Q
257 267Right-handed alpha
Helix 186
AU6
Q
274 282Right-handed alpha
Helix 187
AU7
Q
297 302Right-handed alpha
Helix 188
AU8
R
26 40Right-handed alpha
Helix 189
AU9
R
51 75Right-handed alpha
Helix 190
AV1
R
76 86Right-handed alpha
Helix 191
AV2
R
100 111Right-handed alpha
Helix 192
AV3
R
111 125Right-handed alpha
Helix 193
AV4
R
156 160Right-handed 310
Helix 194
AV5
R
166 209Right-handed alpha
Helix 195
AV6
R
214 252Right-handed alpha
Helix 196
AV7
R
257 267Right-handed alpha
Helix 197
AV8
R
274 282Right-handed alpha
Helix 198
AV9
R
297 302Right-handed alpha
Helix 199
AW1
S
26 40Right-handed alpha
Helix 200
AW2
S
51 75Right-handed alpha
Helix 201
AW3
S
76 86Right-handed alpha
Helix 202
AW4
S
100 111Right-handed alpha
Helix 203
AW5
S
111 125Right-handed alpha
Helix 204
AW6
S
156 160Right-handed 310
Helix 205
AW7
S
166 209Right-handed alpha
Helix 206
AW8
S
214 252Right-handed alpha
Helix 207
AW9
S
257 267Right-handed alpha
Helix 208
AX1
S
274 282Right-handed alpha
Helix 209
AX2
S
297 302Right-handed alpha
Helix 210
AX3
T
26 40Right-handed alpha
Helix 211
AX4
T
51 75Right-handed alpha
Helix 212
AX5
T
76 86Right-handed alpha
Helix 213
AX6
T
100 111Right-handed alpha
Helix 214
AX7
T
111 125Right-handed alpha
Helix 215
AX8
T
156 160Right-handed 310
Helix 216
AX9
T
166 209Right-handed alpha
Helix 217
AY1
T
214 252Right-handed alpha
Helix 218
AY2
T
257 267Right-handed alpha
Helix 219
AY3
T
274 282Right-handed alpha
Helix 220
AY4
T
297 302Right-handed alpha
Helix 221
AY5
U
26 40Right-handed alpha
Helix 222
AY6
U
51 75Right-handed alpha
Helix 223
AY7
U
76 86Right-handed alpha
Helix 224
AY8
U
100 111Right-handed alpha
Helix 225
AY9
U
111 125Right-handed alpha
Helix 226
AZ1
U
156 160Right-handed 310
Helix 227
AZ2
U
166 209Right-handed alpha
Helix 228
AZ3
U
214 252Right-handed alpha
Helix 229
AZ4
U
257 267Right-handed alpha
Helix 230
AZ5
U
274 282Right-handed alpha
Helix 231
AZ6
U
297 302Right-handed alpha
Helix 232
AZ7
V
26 40Right-handed alpha
Helix 233
AZ8
V
51 75Right-handed alpha
Helix 234
AZ9
V
76 86Right-handed alpha
Helix 235
BA1
V
100 111Right-handed alpha
Helix 236
BA2
V
111 125Right-handed alpha
Helix 237
BA3
V
156 160Right-handed 310
Helix 238
BA4
V
166 209Right-handed alpha
Helix 239
BA5
V
214 252Right-handed alpha
Helix 240
BA6
V
257 267Right-handed alpha
Helix 241
BA7
V
274 282Right-handed alpha
Helix 242
BA8
V
297 302Right-handed alpha
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There are no sheets in PDB entry 6VAI
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