Analysis of interatomic Contacts of Structural Units in PDB entry:
6VAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VAP entry

There are 2 chains in PDB entry 6VAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8ARG 255
B
 ASN 7ARG 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6VAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 39Right-handed 310
Helix 2
AA2
A
40 48Right-handed alpha
Helix 3
AA3
A
61 65Right-handed 310
Helix 4
AA4
A
72 88Right-handed alpha
Helix 5
AA5
A
98 114Right-handed alpha
Helix 6
AA6
A
128 132Right-handed 310
Helix 7
AA7
A
137 141Right-handed 310
Helix 8
AA8
A
142 150Right-handed alpha
Helix 9
AA9
A
167 183Right-handed alpha
Helix 10
AB1
A
208 214Right-handed alpha
Helix 11
AB2
A
215 219Right-handed 310
Helix 12
AB3
A
233 237Right-handed 310
Helix 13
AB4
A
238 251Right-handed alpha
Helix 14
AB5
B
36 39Right-handed 310
Helix 15
AB6
B
40 48Right-handed alpha
Helix 16
AB7
B
61 65Right-handed 310
Helix 17
AB8
B
72 88Right-handed alpha
Helix 18
AB9
B
98 114Right-handed alpha
Helix 19
AC1
B
128 132Right-handed 310
Helix 20
AC2
B
137 141Right-handed 310
Helix 21
AC3
B
142 155Right-handed alpha
Helix 22
AC4
B
163 170Right-handed alpha
Helix 23
AC5
B
170 184Right-handed alpha
Helix 24
AC6
B
208 214Right-handed alpha
Helix 25
AC7
B
215 219Right-handed 310
Helix 26
AC8
B
233 238Right-handed alpha
Helix 27
AC9
B
238 250Right-handed alpha
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There are 2 sheets in PDB entry 6VAP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
26 30parallel
Strand 4
A
92 97parallel
Strand 5
A
120 124parallel
Strand 6
A
196 201parallel
Strand 7
A
223 228parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
52 56anti-parallel
Strand 3
B
26 30parallel
Strand 4
B
92 97parallel
Strand 5
B
120 124parallel
Strand 6
B
196 201parallel
Strand 7
B
223 228parallel
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