Analysis of interatomic Contacts of Structural Units in PDB entry:
6VAT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VAT entry

There are 4 chains in PDB entry 6VAT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 242	ALA 585
B	SER 243	ALA 585
C	ALA 241	ALA 585
D	VAL 244	ILE 475

There are 88 helices in PDB entry 6VAT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	274	279	Right-handed alpha
Helix 2	AA2	A	279	289	Right-handed alpha
Helix 3	AA3	A	301	312	Right-handed alpha
Helix 4	AA4	A	314	316	Right-handed 310
Helix 5	AA5	A	317	325	Right-handed alpha
Helix 6	AA6	A	328	337	Right-handed alpha
Helix 7	AA7	A	351	358	Right-handed alpha
Helix 8	AA8	A	371	386	Right-handed alpha
Helix 9	AA9	A	412	437	Right-handed alpha
Helix 10	AB1	A	439	441	Right-handed 310
Helix 11	AB2	A	457	461	Right-handed 310
Helix 12	AB3	A	465	470	Right-handed alpha
Helix 13	AB4	A	491	502	Right-handed alpha
Helix 14	AB5	A	508	512	Right-handed 310
Helix 15	AB6	A	569	581	Right-handed alpha
Helix 16	AB7	B	274	279	Right-handed alpha
Helix 17	AB8	B	279	288	Right-handed alpha
Helix 18	AB9	B	301	312	Right-handed alpha
Helix 19	AC1	B	314	316	Right-handed 310
Helix 20	AC2	B	317	325	Right-handed alpha
Helix 21	AC3	B	328	337	Right-handed alpha
Helix 22	AC4	B	351	357	Right-handed alpha
Helix 23	AC5	B	371	384	Right-handed alpha
Helix 24	AC6	B	385	391	Right-handed alpha
Helix 25	AC7	B	411	437	Right-handed alpha
Helix 26	AC8	B	457	461	Right-handed 310
Helix 27	AC9	B	465	470	Right-handed alpha
Helix 28	AD1	B	491	502	Right-handed alpha
Helix 29	AD2	B	508	512	Right-handed 310
Helix 30	AD3	B	569	581	Right-handed alpha
Helix 31	AD4	C	274	279	Right-handed alpha
Helix 32	AD5	C	279	288	Right-handed alpha
Helix 33	AD6	C	301	312	Right-handed alpha
Helix 34	AD7	C	314	316	Right-handed 310
Helix 35	AD8	C	317	325	Right-handed alpha
Helix 36	AD9	C	328	337	Right-handed alpha
Helix 37	AE1	C	351	356	Right-handed alpha
Helix 38	AE2	C	357	361	Right-handed 310
Helix 39	AE3	C	371	386	Right-handed alpha
Helix 40	AE4	C	408	437	Right-handed alpha
Helix 41	AE5	C	439	441	Right-handed 310
Helix 42	AE6	C	465	470	Right-handed alpha
Helix 43	AE7	C	491	502	Right-handed alpha
Helix 44	AE8	C	508	512	Right-handed 310
Helix 45	AE9	C	569	581	Right-handed alpha
Helix 46	AF1	D	274	279	Right-handed alpha
Helix 47	AF2	D	279	289	Right-handed alpha
Helix 48	AF3	D	301	312	Right-handed alpha
Helix 49	AF4	D	314	316	Right-handed 310
Helix 50	AF5	D	317	325	Right-handed alpha
Helix 51	AF6	D	328	338	Right-handed alpha
Helix 52	AF7	D	351	357	Right-handed alpha
Helix 53	AF8	D	371	386	Right-handed alpha
Helix 54	AF9	D	408	437	Right-handed alpha
Helix 55	AG1	D	439	441	Right-handed 310
Helix 56	AG2	D	456	461	Right-handed 310
Helix 57	AG3	D	465	470	Right-handed alpha
Helix 58	AG4	D	491	502	Right-handed alpha
Helix 59	AG5	D	508	512	Right-handed 310
Helix 60	AG6	D	569	581	Right-handed alpha
Helix 61	AG7	E	274	279	Right-handed alpha
Helix 62	AG8	E	279	288	Right-handed alpha
Helix 63	AG9	E	301	312	Right-handed alpha
Helix 64	AH1	E	314	316	Right-handed 310
Helix 65	AH2	E	317	325	Right-handed alpha
Helix 66	AH3	E	328	337	Right-handed alpha
Helix 67	AH4	E	351	355	Right-handed 310
Helix 68	AH5	E	371	386	Right-handed alpha
Helix 69	AH6	E	412	437	Right-handed alpha
Helix 70	AH7	E	465	470	Right-handed alpha
Helix 71	AH8	E	491	502	Right-handed alpha
Helix 72	AH9	E	508	512	Right-handed 310
Helix 73	AI1	E	569	581	Right-handed alpha
Helix 74	AI2	F	274	279	Right-handed alpha
Helix 75	AI3	F	279	288	Right-handed alpha
Helix 76	AI4	F	301	312	Right-handed alpha
Helix 77	AI5	F	314	316	Right-handed 310
Helix 78	AI6	F	317	325	Right-handed alpha
Helix 79	AI7	F	328	337	Right-handed alpha
Helix 80	AI8	F	351	356	Right-handed alpha
Helix 81	AI9	F	371	384	Right-handed alpha
Helix 82	AJ1	F	412	437	Right-handed alpha
Helix 83	AJ2	F	439	441	Right-handed 310
Helix 84	AJ3	F	457	461	Right-handed 310
Helix 85	AJ4	F	465	470	Right-handed alpha
Helix 86	AJ5	F	491	502	Right-handed alpha
Helix 87	AJ6	F	508	512	Right-handed 310
Helix 88	AJ7	F	570	582	Right-handed alpha

There are 18 sheets in PDB entry 6VAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	345	first strand
Strand 2	A	393	399	parallel
Strand 3	A	261	270	parallel
Strand 4	A	443	452	parallel
Strand 5	A	473	476	anti-parallel
Strand 6	A	290	292	anti-parallel
Strand 7	A	483	485	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	489	490	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	531	first strand
Strand 2	A	535	539	anti-parallel
Strand 3	A	544	548	anti-parallel
Strand 4	A	553	556	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	345	first strand
Strand 2	B	393	399	parallel
Strand 3	B	261	267	parallel
Strand 4	B	443	449	parallel
Strand 5	B	473	476	anti-parallel
Strand 6	B	290	292	anti-parallel
Strand 7	B	483	485	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	489	490	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	531	first strand
Strand 2	B	535	539	anti-parallel
Strand 3	B	544	548	anti-parallel
Strand 4	B	553	556	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	345	first strand
Strand 2	C	393	399	parallel
Strand 3	C	261	270	parallel
Strand 4	C	443	452	parallel
Strand 5	C	474	476	anti-parallel
Strand 6	C	290	292	anti-parallel
Strand 7	C	483	485	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	296	first strand
Strand 2	C	489	490	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	531	first strand
Strand 2	C	536	539	anti-parallel
Strand 3	C	544	547	anti-parallel
Strand 4	C	553	556	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	345	first strand
Strand 2	D	393	399	parallel
Strand 3	D	261	267	parallel
Strand 4	D	443	449	parallel
Strand 5	D	474	476	anti-parallel
Strand 6	D	290	292	anti-parallel
Strand 7	D	483	485	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	296	first strand
Strand 2	D	489	490	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	531	first strand
Strand 2	D	535	539	anti-parallel
Strand 3	D	544	548	anti-parallel
Strand 4	D	553	556	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	345	first strand
Strand 2	E	393	399	parallel
Strand 3	E	261	270	parallel
Strand 4	E	443	452	parallel
Strand 5	E	473	476	anti-parallel
Strand 6	E	290	292	anti-parallel
Strand 7	E	483	485	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	295	296	first strand
Strand 2	E	489	490	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	528	531	first strand
Strand 2	E	535	539	anti-parallel
Strand 3	E	544	548	anti-parallel
Strand 4	E	553	556	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	340	345	first strand
Strand 2	F	393	399	parallel
Strand 3	F	261	270	parallel
Strand 4	F	443	452	parallel
Strand 5	F	473	476	anti-parallel
Strand 6	F	290	292	anti-parallel
Strand 7	F	483	485	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	295	296	first strand
Strand 2	F	489	490	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	528	531	first strand
Strand 2	F	535	539	anti-parallel
Strand 3	F	543	548	anti-parallel
Strand 4	F	553	557	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VAT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VAT