Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VBB entry

There are 2 chains in PDB entry 6VBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 50LYS 394
B
 PRO 50ARG 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6VBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 68Right-handed alpha
Helix 2
AA2
A
73 88Right-handed alpha
Helix 3
AA3
A
97 107Right-handed alpha
Helix 4
AA4
A
137 143Right-handed alpha
Helix 5
AA5
A
162 171Right-handed alpha
Helix 6
AA6
A
221 233Right-handed alpha
Helix 7
AA7
A
252 262Right-handed alpha
Helix 8
AA8
A
305 317Right-handed alpha
Helix 9
AA9
A
378 392Right-handed alpha
Helix 10
AB1
B
51 68Right-handed alpha
Helix 11
AB2
B
73 88Right-handed alpha
Helix 12
AB3
B
97 107Right-handed alpha
Helix 13
AB4
B
137 143Right-handed alpha
Helix 14
AB5
B
162 171Right-handed alpha
Helix 15
AB6
B
221 233Right-handed alpha
Helix 16
AB7
B
252 262Right-handed alpha
Helix 17
AB8
B
305 317Right-handed alpha
Helix 18
AB9
B
378 392Right-handed alpha
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There are 12 sheets in PDB entry 6VBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
344 353anti-parallel
Strand 3
A
268 274anti-parallel
Strand 4
A
280 283anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
344 353anti-parallel
Strand 3
A
332 338anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
112 114anti-parallel
Strand 3
A
195 196anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
128 131anti-parallel
Strand 3
A
149 153anti-parallel
Strand 4
A
156 157anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
128 131anti-parallel
Strand 3
A
149 153anti-parallel
Strand 4
A
177 182anti-parallel
Strand 5
A
189 192anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
210 214anti-parallel
Strand 3
A
240 244parallel
Strand 4
A
295 299parallel
Strand 5
A
321 324parallel
Strand 6
A
369 370parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
344 353anti-parallel
Strand 3
B
268 274anti-parallel
Strand 4
B
280 283anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
344 353anti-parallel
Strand 3
B
332 338anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
112 114anti-parallel
Strand 3
B
195 196anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 121first strand
Strand 2
B
128 131anti-parallel
Strand 3
B
149 153anti-parallel
Strand 4
B
156 157anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 121first strand
Strand 2
B
128 131anti-parallel
Strand 3
B
149 153anti-parallel
Strand 4
B
177 182anti-parallel
Strand 5
B
189 192anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 205first strand
Strand 2
B
210 214anti-parallel
Strand 3
B
240 244parallel
Strand 4
B
294 299parallel
Strand 5
B
321 324parallel
Strand 6
B
369 370parallel
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