Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VBG entry

There are 4 chains in PDB entry 6VBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 409
C
 GLN 1HIS 121
B
 MET 1LEU 409
D
 GLN 1SER 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6VBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 27Right-handed alpha
Helix 2
AA2
A
29 38Right-handed alpha
Helix 3
AA3
A
44 71Right-handed alpha
Helix 4
AA4
A
74 85Right-handed alpha
Helix 5
AA5
A
86 94Right-handed alpha
Helix 6
AA6
A
94 102Right-handed alpha
Helix 7
AA7
A
102 118Right-handed alpha
Helix 8
AA8
A
120 136Right-handed alpha
Helix 9
AA9
A
139 162Right-handed alpha
Helix 10
AB1
A
167 187Right-handed alpha
Helix 11
AB2
A
209 215Right-handed alpha
Helix 12
AB3
A
216 218Right-handed 310
Helix 13
AB4
A
219 232Right-handed alpha
Helix 14
AB5
A
232 240Right-handed alpha
Helix 15
AB6
A
242 249Right-handed alpha
Helix 16
AB7
A
254 286Right-handed alpha
Helix 17
AB8
A
287 309Right-handed alpha
Helix 18
AB9
A
311 321Right-handed alpha
Helix 19
AC1
A
321 341Right-handed alpha
Helix 20
AC2
A
342 344Right-handed 310
Helix 21
AC3
A
345 354Right-handed alpha
Helix 22
AC4
A
355 376Right-handed alpha
Helix 23
AC5
A
377 400Right-handed alpha
Helix 24
AC6
A
405 409Right-handed 310
Helix 25
AC7
C
28 32Right-handed 310
Helix 26
AC8
C
87 91Right-handed 310
Helix 27
AC9
B
6 27Right-handed alpha
Helix 28
AD1
B
29 37Right-handed alpha
Helix 29
AD2
B
41 71Right-handed alpha
Helix 30
AD3
B
74 85Right-handed alpha
Helix 31
AD4
B
86 94Right-handed alpha
Helix 32
AD5
B
94 102Right-handed alpha
Helix 33
AD6
B
102 118Right-handed alpha
Helix 34
AD7
B
120 136Right-handed alpha
Helix 35
AD8
B
139 163Right-handed alpha
Helix 36
AD9
B
167 187Right-handed alpha
Helix 37
AE1
B
209 215Right-handed alpha
Helix 38
AE2
B
219 232Right-handed alpha
Helix 39
AE3
B
232 240Right-handed alpha
Helix 40
AE4
B
242 249Right-handed alpha
Helix 41
AE5
B
253 286Right-handed alpha
Helix 42
AE6
B
287 309Right-handed alpha
Helix 43
AE7
B
311 341Right-handed alpha
Helix 44
AE8
B
342 344Right-handed 310
Helix 45
AE9
B
345 354Right-handed alpha
Helix 46
AF1
B
355 376Right-handed alpha
Helix 47
AF2
B
377 400Right-handed alpha
Helix 48
AF3
B
404 409Right-handed 310
Helix 49
AF4
D
28 32Right-handed 310
Helix 50
AF5
D
87 91Right-handed 310
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There are 6 sheets in PDB entry 6VBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 7first strand
Strand 2
C
18 26anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
69 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
111 116parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
111 116parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
104 107anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 7first strand
Strand 2
D
18 26anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
111 116parallel
Strand 3
D
92 100anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
46 51anti-parallel
Strand 6
D
58 60anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
111 116parallel
Strand 3
D
92 100anti-parallel
Strand 4
D
103 107anti-parallel
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