Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VBI entry

There are 2 chains in PDB entry 6VBI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 535GLN 859
B
 GLU 535GLN 859
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6VBI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
536 546Right-handed alpha
Helix 2
AA2
A
550 555Right-handed alpha
Helix 3
AA3
A
567 582Right-handed alpha
Helix 4
AA4
A
583 588Right-handed alpha
Helix 5
AA5
A
591 605Right-handed alpha
Helix 6
AA6
A
610 613Right-handed 310
Helix 7
AA7
A
614 630Right-handed alpha
Helix 8
AA8
A
633 638Right-handed 310
Helix 9
AA9
A
639 653Right-handed alpha
Helix 10
AB1
A
672 677Right-handed alpha
Helix 11
AB2
A
686 694Right-handed alpha
Helix 12
AB3
A
705 722Right-handed alpha
Helix 13
AB4
A
724 741Right-handed alpha
Helix 14
AB5
A
748 765Right-handed alpha
Helix 15
AB6
A
766 770Right-handed 310
Helix 16
AB7
A
771 780Right-handed alpha
Helix 17
AB8
A
780 785Right-handed alpha
Helix 18
AB9
A
812 824Right-handed alpha
Helix 19
AC1
A
824 836Right-handed alpha
Helix 20
AC2
A
839 858Right-handed alpha
Helix 21
AC3
B
536 546Right-handed alpha
Helix 22
AC4
B
550 555Right-handed alpha
Helix 23
AC5
B
567 582Right-handed alpha
Helix 24
AC6
B
583 588Right-handed alpha
Helix 25
AC7
B
591 605Right-handed alpha
Helix 26
AC8
B
610 613Right-handed 310
Helix 27
AC9
B
614 632Right-handed alpha
Helix 28
AD1
B
633 638Right-handed 310
Helix 29
AD2
B
639 653Right-handed alpha
Helix 30
AD3
B
672 677Right-handed alpha
Helix 31
AD4
B
686 694Right-handed alpha
Helix 32
AD5
B
705 722Right-handed alpha
Helix 33
AD6
B
724 741Right-handed alpha
Helix 34
AD7
B
748 765Right-handed alpha
Helix 35
AD8
B
766 770Right-handed 310
Helix 36
AD9
B
771 781Right-handed alpha
Helix 37
AE1
B
782 784Right-handed 310
Helix 38
AE2
B
812 824Right-handed alpha
Helix 39
AE3
B
824 836Right-handed alpha
Helix 40
AE4
B
839 858Right-handed alpha
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There are no sheets in PDB entry 6VBI
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