Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VBJ entry

There are 2 chains in PDB entry 6VBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 260ILE 572
B
 MET 260ILE 572
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6VBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
277 279Right-handed 310
Helix 2
AA2
A
280 287Right-handed alpha
Helix 3
AA3
A
298 301Right-handed 310
Helix 4
AA4
A
309 324Right-handed alpha
Helix 5
AA5
A
352 356Right-handed 310
Helix 6
AA6
A
358 366Right-handed alpha
Helix 7
AA7
A
366 382Right-handed alpha
Helix 8
AA8
A
395 416Right-handed alpha
Helix 9
AA9
A
432 438Right-handed alpha
Helix 10
AB1
A
438 444Right-handed alpha
Helix 11
AB2
A
452 462Right-handed alpha
Helix 12
AB3
A
467 474Right-handed 310
Helix 13
AB4
A
478 495Right-handed alpha
Helix 14
AB5
A
503 507Right-handed 310
Helix 15
AB6
A
508 519Right-handed alpha
Helix 16
AB7
A
526 528Right-handed 310
Helix 17
AB8
A
529 539Right-handed alpha
Helix 18
AB9
A
541 554Right-handed alpha
Helix 19
AC1
A
557 571Right-handed alpha
Helix 20
AC2
B
279 287Right-handed alpha
Helix 21
AC3
B
298 301Right-handed 310
Helix 22
AC4
B
309 324Right-handed alpha
Helix 23
AC5
B
342 346Right-handed 310
Helix 24
AC6
B
352 356Right-handed 310
Helix 25
AC7
B
359 366Right-handed alpha
Helix 26
AC8
B
366 381Right-handed alpha
Helix 27
AC9
B
382 384Right-handed 310
Helix 28
AD1
B
395 417Right-handed alpha
Helix 29
AD2
B
432 438Right-handed alpha
Helix 30
AD3
B
438 443Right-handed alpha
Helix 31
AD4
B
452 462Right-handed alpha
Helix 32
AD5
B
467 474Right-handed 310
Helix 33
AD6
B
478 495Right-handed alpha
Helix 34
AD7
B
503 507Right-handed 310
Helix 35
AD8
B
508 519Right-handed alpha
Helix 36
AD9
B
529 539Right-handed alpha
Helix 37
AE1
B
541 555Right-handed alpha
Helix 38
AE2
B
557 571Right-handed alpha
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There are 2 sheets in PDB entry 6VBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 275first strand
Strand 2
A
292 296parallel
Strand 3
A
329 332parallel
Strand 4
A
386 390parallel
Strand 5
A
425 430parallel
Strand 6
A
448 451parallel
Strand 7
A
498 501parallel
Strand 8
A
522 525parallel
Strand 9
A
270 275parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 275first strand
Strand 2
B
292 296parallel
Strand 3
B
329 332parallel
Strand 4
B
386 390parallel
Strand 5
B
425 430parallel
Strand 6
B
448 451parallel
Strand 7
B
498 501parallel
Strand 8
B
522 526parallel
Strand 9
B
270 275parallel
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