Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VBN entry

There are 4 chains in PDB entry 6VBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 40PRO 383
B
 LEU 40ASN 382
C
 LEU 40THR 384
D
 LEU 40ASN 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 6VBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 46Right-handed alpha
Helix 2
AA2
A
47 52Right-handed alpha
Helix 3
AA3
A
57 62Right-handed alpha
Helix 4
AA4
A
68 99Right-handed alpha
Helix 5
AA5
A
104 128Right-handed alpha
Helix 6
AA6
A
128 133Right-handed alpha
Helix 7
AA7
A
136 148Right-handed alpha
Helix 8
AA8
A
151 154Right-handed 310
Helix 9
AA9
A
155 166Right-handed alpha
Helix 10
AB1
A
179 184Right-handed 310
Helix 11
AB2
A
186 198Right-handed alpha
Helix 12
AB3
A
200 211Right-handed alpha
Helix 13
AB4
A
221 243Right-handed alpha
Helix 14
AB5
A
249 266Right-handed alpha
Helix 15
AB6
A
269 279Right-handed alpha
Helix 16
AB7
A
285 298Right-handed alpha
Helix 17
AB8
A
301 303Right-handed 310
Helix 18
AB9
A
304 337Right-handed alpha
Helix 19
AC1
A
346 355Right-handed alpha
Helix 20
AC2
A
362 367Right-handed alpha
Helix 21
AC3
A
368 372Right-handed 310
Helix 22
AC4
A
374 378Right-handed 310
Helix 23
AC5
B
41 46Right-handed alpha
Helix 24
AC6
B
47 52Right-handed alpha
Helix 25
AC7
B
57 62Right-handed alpha
Helix 26
AC8
B
68 99Right-handed alpha
Helix 27
AC9
B
104 128Right-handed alpha
Helix 28
AD1
B
128 133Right-handed alpha
Helix 29
AD2
B
136 148Right-handed alpha
Helix 30
AD3
B
151 154Right-handed 310
Helix 31
AD4
B
155 166Right-handed alpha
Helix 32
AD5
B
186 198Right-handed alpha
Helix 33
AD6
B
200 211Right-handed alpha
Helix 34
AD7
B
221 243Right-handed alpha
Helix 35
AD8
B
247 267Right-handed alpha
Helix 36
AD9
B
269 279Right-handed alpha
Helix 37
AE1
B
285 298Right-handed alpha
Helix 38
AE2
B
301 303Right-handed 310
Helix 39
AE3
B
304 336Right-handed alpha
Helix 40
AE4
B
346 353Right-handed alpha
Helix 41
AE5
B
362 368Right-handed alpha
Helix 42
AE6
B
369 372Right-handed 310
Helix 43
AE7
B
374 378Right-handed 310
Helix 44
AE8
C
41 46Right-handed alpha
Helix 45
AE9
C
47 52Right-handed alpha
Helix 46
AF1
C
57 62Right-handed alpha
Helix 47
AF2
C
68 99Right-handed alpha
Helix 48
AF3
C
104 128Right-handed alpha
Helix 49
AF4
C
128 133Right-handed alpha
Helix 50
AF5
C
136 148Right-handed alpha
Helix 51
AF6
C
151 154Right-handed 310
Helix 52
AF7
C
155 166Right-handed alpha
Helix 53
AF8
C
168 172Right-handed 310
Helix 54
AF9
C
179 184Right-handed 310
Helix 55
AG1
C
186 198Right-handed alpha
Helix 56
AG2
C
200 211Right-handed alpha
Helix 57
AG3
C
221 242Right-handed alpha
Helix 58
AG4
C
247 266Right-handed alpha
Helix 59
AG5
C
269 279Right-handed alpha
Helix 60
AG6
C
285 298Right-handed alpha
Helix 61
AG7
C
301 303Right-handed 310
Helix 62
AG8
C
304 335Right-handed alpha
Helix 63
AG9
C
347 353Right-handed alpha
Helix 64
AH1
C
362 367Right-handed alpha
Helix 65
AH2
C
368 372Right-handed 310
Helix 66
AH3
C
374 378Right-handed 310
Helix 67
AH4
D
41 46Right-handed alpha
Helix 68
AH5
D
47 52Right-handed alpha
Helix 69
AH6
D
57 62Right-handed alpha
Helix 70
AH7
D
68 99Right-handed alpha
Helix 71
AH8
D
104 128Right-handed alpha
Helix 72
AH9
D
128 133Right-handed alpha
Helix 73
AI1
D
136 148Right-handed alpha
Helix 74
AI2
D
151 154Right-handed 310
Helix 75
AI3
D
155 166Right-handed alpha
Helix 76
AI4
D
179 184Right-handed 310
Helix 77
AI5
D
186 198Right-handed alpha
Helix 78
AI6
D
200 211Right-handed alpha
Helix 79
AI7
D
221 244Right-handed alpha
Helix 80
AI8
D
247 267Right-handed alpha
Helix 81
AI9
D
269 279Right-handed alpha
Helix 82
AJ1
D
285 298Right-handed alpha
Helix 83
AJ2
D
301 303Right-handed 310
Helix 84
AJ3
D
304 336Right-handed alpha
Helix 85
AJ4
D
347 353Right-handed alpha
Helix 86
AJ5
D
362 368Right-handed alpha
Helix 87
AJ6
D
369 372Right-handed 310
Helix 88
AJ7
D
374 378Right-handed 310
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There is 1 sheet (AA1) in PDB entry 6VBN.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
341 342first strand
Strand 2
C
345 346anti-parallel
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