Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VBS entry

There are 6 chains in PDB entry 6VBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1GLU 156
B
 GLU 1ILE 155
C
 ASN 2LYS 157
D
 GLU 1GLU 159
E
 GLU 1GLU 156
F
 GLU 1GLU 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6VBS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 72Right-handed 310
Helix 2
AA2
A
118 123Right-handed 310
Helix 3
AA3
A
141 146Right-handed 310
Helix 4
AA4
B
68 72Right-handed 310
Helix 5
AA5
B
118 123Right-handed 310
Helix 6
AA6
B
141 146Right-handed 310
Helix 7
AA7
C
68 72Right-handed 310
Helix 8
AA8
C
118 122Right-handed 310
Helix 9
AA9
C
141 145Right-handed 310
Helix 10
AB1
D
68 72Right-handed 310
Helix 11
AB2
D
118 122Right-handed 310
Helix 12
AB3
D
141 145Right-handed 310
Helix 13
AB4
E
68 72Right-handed 310
Helix 14
AB5
E
118 122Right-handed 310
Helix 15
AB6
E
141 146Right-handed 310
Helix 16
AB7
F
68 72Right-handed 310
Helix 17
AB8
F
118 123Right-handed 310
Helix 18
AB9
F
141 146Right-handed 310
Back to top of page

There are 18 sheets in PDB entry 6VBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
149 154anti-parallel
Strand 4
A
3 11anti-parallel
Strand 5
A
16 28anti-parallel
Strand 6
A
31 38anti-parallel
Strand 7
A
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
126 130anti-parallel
Strand 3
B
149 154anti-parallel
Strand 4
B
3 12anti-parallel
Strand 5
B
15 28anti-parallel
Strand 6
B
31 38anti-parallel
Strand 7
B
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 51first strand
Strand 2
C
126 130anti-parallel
Strand 3
C
149 154anti-parallel
Strand 4
C
3 12anti-parallel
Strand 5
C
15 28anti-parallel
Strand 6
C
31 38anti-parallel
Strand 7
C
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 46first strand
Strand 2
C
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 61first strand
Strand 2
C
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 51first strand
Strand 2
D
125 130anti-parallel
Strand 3
D
149 155anti-parallel
Strand 4
D
3 11anti-parallel
Strand 5
D
16 28anti-parallel
Strand 6
D
31 38anti-parallel
Strand 7
D
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 46first strand
Strand 2
D
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 61first strand
Strand 2
D
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
48 51first strand
Strand 2
E
125 130anti-parallel
Strand 3
E
149 155anti-parallel
Strand 4
E
3 12anti-parallel
Strand 5
E
15 28anti-parallel
Strand 6
E
31 38anti-parallel
Strand 7
E
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 46first strand
Strand 2
E
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 61first strand
Strand 2
E
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
48 51first strand
Strand 2
F
126 130anti-parallel
Strand 3
F
149 154anti-parallel
Strand 4
F
3 10anti-parallel
Strand 5
F
19 28anti-parallel
Strand 6
F
31 38anti-parallel
Strand 7
F
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
44 46first strand
Strand 2
F
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
59 61first strand
Strand 2
F
64 66anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il