Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VBU entry

There are 8 chains in PDB entry 6VBU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	MET 7	GLN 58
1	SER 1	LEU 590
2	LEU 2	GLY 717
4	LYS 34	LEU 424
5	ALA 6	VAL 339
7	ASP 2	ALA 715
8	MET 1	ALA 499
9	SER 2	SER 828

There are 85 helices in PDB entry 6VBU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	38	57	Right-handed alpha
Helix 2	AA2	1	431	444	Right-handed alpha
Helix 3	AA3	1	444	474	Right-handed alpha
Helix 4	AA4	2	339	358	Right-handed alpha
Helix 5	AA5	2	490	494	Right-handed 310
Helix 6	AA6	2	506	517	Right-handed alpha
Helix 7	AA7	2	560	575	Right-handed alpha
Helix 8	AA8	2	586	634	Right-handed alpha
Helix 9	AA9	2	636	685	Right-handed alpha
Helix 10	AB1	2	689	704	Right-handed alpha
Helix 11	AB2	2	706	716	Right-handed alpha
Helix 12	AB3	4	36	45	Right-handed alpha
Helix 13	AB4	4	49	63	Right-handed alpha
Helix 14	AB5	4	68	80	Right-handed alpha
Helix 15	AB6	4	82	97	Right-handed alpha
Helix 16	AB7	4	100	113	Right-handed alpha
Helix 17	AB8	4	117	131	Right-handed alpha
Helix 18	AB9	4	134	148	Right-handed alpha
Helix 19	AC1	4	150	165	Right-handed alpha
Helix 20	AC2	4	167	182	Right-handed alpha
Helix 21	AC3	4	183	197	Right-handed alpha
Helix 22	AC4	4	201	215	Right-handed alpha
Helix 23	AC5	4	218	232	Right-handed alpha
Helix 24	AC6	4	235	249	Right-handed alpha
Helix 25	AC7	4	251	263	Right-handed alpha
Helix 26	AC8	4	269	283	Right-handed alpha
Helix 27	AC9	4	285	299	Right-handed alpha
Helix 28	AD1	4	303	317	Right-handed alpha
Helix 29	AD2	4	322	334	Right-handed alpha
Helix 30	AD3	4	337	350	Right-handed alpha
Helix 31	AD4	4	354	368	Right-handed alpha
Helix 32	AD5	4	372	385	Right-handed alpha
Helix 33	AD6	4	390	400	Right-handed alpha
Helix 34	AD7	4	412	423	Right-handed alpha
Helix 35	AD8	5	119	134	Right-handed alpha
Helix 36	AD9	5	226	229	Right-handed 310
Helix 37	AE1	5	239	260	Right-handed alpha
Helix 38	AE2	5	298	303	Right-handed 310
Helix 39	AE3	5	332	338	Right-handed alpha
Helix 40	AE4	7	337	366	Right-handed alpha
Helix 41	AE5	7	367	369	Right-handed 310
Helix 42	AE6	7	516	528	Right-handed alpha
Helix 43	AE7	7	570	588	Right-handed alpha
Helix 44	AE8	7	598	637	Right-handed alpha
Helix 45	AE9	7	643	661	Right-handed alpha
Helix 46	AF1	7	662	686	Right-handed alpha
Helix 47	AF2	7	693	695	Right-handed 310
Helix 48	AF3	7	696	703	Right-handed alpha
Helix 49	AF4	7	704	715	Right-handed alpha
Helix 50	AF5	8	2	13	Right-handed alpha
Helix 51	AF6	8	17	30	Right-handed alpha
Helix 52	AF7	8	33	48	Right-handed alpha
Helix 53	AF8	8	59	65	Right-handed alpha
Helix 54	AF9	8	121	126	Right-handed alpha
Helix 55	AG1	8	167	172	Right-handed alpha
Helix 56	AG2	8	174	188	Right-handed alpha
Helix 57	AG3	8	191	206	Right-handed alpha
Helix 58	AG4	8	210	225	Right-handed alpha
Helix 59	AG5	8	226	239	Right-handed alpha
Helix 60	AG6	8	243	257	Right-handed alpha
Helix 61	AG7	8	259	274	Right-handed alpha
Helix 62	AG8	8	277	291	Right-handed alpha
Helix 63	AG9	8	293	308	Right-handed alpha
Helix 64	AH1	8	311	325	Right-handed alpha
Helix 65	AH2	8	327	341	Right-handed alpha
Helix 66	AH3	8	346	360	Right-handed alpha
Helix 67	AH4	8	364	376	Right-handed alpha
Helix 68	AH5	8	379	397	Right-handed alpha
Helix 69	AH6	8	398	413	Right-handed alpha
Helix 70	AH7	8	416	431	Right-handed alpha
Helix 71	AH8	8	432	447	Right-handed alpha
Helix 72	AH9	8	450	463	Right-handed alpha
Helix 73	AI1	8	466	481	Right-handed alpha
Helix 74	AI2	8	484	499	Right-handed alpha
Helix 75	AI3	9	207	213	Right-handed alpha
Helix 76	AI4	9	377	397	Right-handed alpha
Helix 77	AI5	9	530	533	Right-handed 310
Helix 78	AI6	9	558	563	Right-handed alpha
Helix 79	AI7	9	608	628	Right-handed alpha
Helix 80	AI8	9	644	686	Right-handed alpha
Helix 81	AI9	9	692	742	Right-handed alpha
Helix 82	AJ1	9	745	757	Right-handed alpha
Helix 83	AJ2	9	767	784	Right-handed alpha
Helix 84	AJ3	9	787	794	Right-handed alpha
Helix 85	AJ4	9	805	821	Right-handed alpha

There are 48 sheets in PDB entry 6VBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	36	37	first strand
Strand 2	8	108	109	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	3	9	first strand
Strand 2	1	395	402	anti-parallel
Strand 3	1	384	392	anti-parallel
Strand 4	1	373	381	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	21	24	first strand
Strand 2	1	33	38	anti-parallel
Strand 3	1	47	52	anti-parallel
Strand 4	1	55	61	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	68	71	first strand
Strand 2	1	84	88	anti-parallel
Strand 3	1	91	96	anti-parallel
Strand 4	1	99	105	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	200	207	first strand
Strand 2	1	217	223	anti-parallel
Strand 3	1	227	231	anti-parallel
Strand 4	1	238	243	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	248	256	first strand
Strand 2	1	260	267	anti-parallel
Strand 3	1	271	275	anti-parallel
Strand 4	1	285	287	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	292	297	first strand
Strand 2	1	301	306	anti-parallel
Strand 3	1	310	315	anti-parallel
Strand 4	1	320	325	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	330	335	first strand
Strand 2	1	346	350	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	354	355	first strand
Strand 2	1	367	368	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	486	493	first strand
Strand 2	1	498	507	anti-parallel
Strand 3	1	545	553	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	535	536	first strand
Strand 2	1	518	522	anti-parallel
Strand 3	1	563	569	anti-parallel
Strand 4	1	578	583	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	6	9	first strand
Strand 2	2	313	317	anti-parallel
Strand 3	2	305	309	anti-parallel
Strand 4	2	289	294	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	14	23	first strand
Strand 2	2	29	35	anti-parallel
Strand 3	2	39	43	anti-parallel
Strand 4	2	66	70	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	75	81	first strand
Strand 2	2	91	96	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	122	123	first strand
Strand 2	2	138	139	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	144	147	first strand
Strand 2	2	153	157	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	163	167	first strand
Strand 2	2	179	183	anti-parallel
Strand 3	2	187	191	anti-parallel
Strand 4	2	199	201	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	208	213	first strand
Strand 2	2	216	220	anti-parallel
Strand 3	2	225	230	anti-parallel
Strand 4	2	233	239	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	246	250	first strand
Strand 2	2	259	263	anti-parallel
Strand 3	2	268	272	anti-parallel
Strand 4	2	279	284	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	377	378	first strand
Strand 2	7	373	374	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	383	390	first strand
Strand 2	2	399	406	anti-parallel
Strand 3	2	440	445	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	427	430	first strand
Strand 2	2	411	418	anti-parallel
Strand 3	2	453	462	anti-parallel
Strand 4	2	468	478	anti-parallel
Strand 5	7	480	488	anti-parallel
Strand 6	7	466	474	anti-parallel
Strand 7	7	404	411	anti-parallel
Strand 8	7	441	445	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	485	486	first strand
Strand 2	2	531	536	anti-parallel
Strand 3	2	543	548	anti-parallel
Strand 4	2	553	556	anti-parallel
Strand 5	2	498	502	anti-parallel
Strand 6	2	583	585	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	13	15	first strand
Strand 2	5	68	72	anti-parallel
Strand 3	5	56	60	anti-parallel
Strand 4	5	47	53	anti-parallel
Strand 5	5	30	40	anti-parallel
Strand 6	5	105	112	anti-parallel
Strand 7	5	94	100	anti-parallel
Strand 8	5	76	82	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	141	142	first strand
Strand 2	5	198	202	anti-parallel
Strand 3	5	186	191	anti-parallel
Strand 4	5	178	183	anti-parallel
Strand 5	5	160	167	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	206	210	first strand
Strand 2	5	220	224	anti-parallel
Strand 3	5	232	235	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	314	316	first strand
Strand 2	5	323	325	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	6	12	first strand
Strand 2	7	313	318	anti-parallel
Strand 3	7	304	308	anti-parallel
Strand 4	7	291	295	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	21	24	first strand
Strand 2	7	34	37	anti-parallel
Strand 3	7	45	50	anti-parallel
Strand 4	7	53	59	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	69	72	first strand
Strand 2	7	81	84	anti-parallel
Strand 3	7	90	93	anti-parallel
Strand 4	7	99	103	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	114	117	first strand
Strand 2	7	120	124	anti-parallel
Strand 3	7	128	133	anti-parallel
Strand 4	7	137	142	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	147	152	first strand
Strand 2	7	163	167	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	171	176	first strand
Strand 2	7	179	185	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	190	193	first strand
Strand 2	7	209	211	anti-parallel
Strand 3	7	215	221	anti-parallel
Strand 4	7	226	233	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	243	246	first strand
Strand 2	7	257	260	anti-parallel
Strand 3	7	266	270	anti-parallel
Strand 4	7	278	283	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	384	387	first strand
Strand 2	7	393	399	anti-parallel
Strand 3	7	453	460	anti-parallel
Strand 4	7	415	416	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	494	497	first strand
Strand 2	7	540	547	anti-parallel
Strand 3	7	554	559	anti-parallel
Strand 4	7	562	567	anti-parallel
Strand 5	7	508	512	anti-parallel
Strand 6	7	592	596	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	6	13	first strand
Strand 2	9	353	359	anti-parallel
Strand 3	9	344	348	anti-parallel
Strand 4	9	332	336	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	25	28	first strand
Strand 2	9	39	42	anti-parallel
Strand 3	9	48	52	anti-parallel
Strand 4	9	68	73	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	80	84	first strand
Strand 2	9	94	99	anti-parallel
Strand 3	9	102	106	anti-parallel
Strand 4	9	127	130	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	108	111	first strand
Strand 2	9	120	123	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	135	141	first strand
Strand 2	9	151	156	anti-parallel
Strand 3	9	160	165	anti-parallel
Strand 4	9	168	174	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	184	187	first strand
Strand 2	9	192	196	anti-parallel
Strand 3	9	201	206	anti-parallel
Strand 4	9	235	240	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	245	251	first strand
Strand 2	9	259	264	anti-parallel
Strand 3	9	268	271	anti-parallel
Strand 4	9	277	281	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	287	291	first strand
Strand 2	9	302	307	anti-parallel
Strand 3	9	311	316	anti-parallel
Strand 4	9	319	325	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	411	417	first strand
Strand 2	9	440	448	anti-parallel
Strand 3	9	482	491	anti-parallel
Strand 4	9	465	467	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	471	477	first strand
Strand 2	9	452	460	anti-parallel
Strand 3	9	501	510	anti-parallel
Strand 4	9	519	528	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	535	537	first strand
Strand 2	9	577	582	anti-parallel
Strand 3	9	587	592	anti-parallel
Strand 4	9	599	603	anti-parallel
Strand 5	9	546	550	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VBU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBU