Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VBV entry

There are 9 chains in PDB entry 6VBV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	MET 7	GLN 58
1	SER 1	LEU 590
2	LEU 2	GLY 717
4	PHE 29	LEU 424
5	ALA 6	VAL 339
7	ASP 2	ALA 715
8	MET 1	ALA 499
9	SER 2	SER 828
3	GLU 17	SER 183

There are 91 helices in PDB entry 6VBV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	38	58	Right-handed alpha
Helix 2	AA2	1	431	444	Right-handed alpha
Helix 3	AA3	1	444	474	Right-handed alpha
Helix 4	AA4	2	36	38	Right-handed 310
Helix 5	AA5	2	339	359	Right-handed alpha
Helix 6	AA6	2	490	494	Right-handed 310
Helix 7	AA7	2	506	517	Right-handed alpha
Helix 8	AA8	2	560	575	Right-handed alpha
Helix 9	AA9	2	586	635	Right-handed alpha
Helix 10	AB1	2	636	685	Right-handed alpha
Helix 11	AB2	2	688	703	Right-handed alpha
Helix 12	AB3	2	706	716	Right-handed alpha
Helix 13	AB4	4	35	45	Right-handed alpha
Helix 14	AB5	4	49	63	Right-handed alpha
Helix 15	AB6	4	68	80	Right-handed alpha
Helix 16	AB7	4	84	97	Right-handed alpha
Helix 17	AB8	4	100	114	Right-handed alpha
Helix 18	AB9	4	117	129	Right-handed alpha
Helix 19	AC1	4	134	148	Right-handed alpha
Helix 20	AC2	4	150	165	Right-handed alpha
Helix 21	AC3	4	167	182	Right-handed alpha
Helix 22	AC4	4	183	197	Right-handed alpha
Helix 23	AC5	4	201	215	Right-handed alpha
Helix 24	AC6	4	218	232	Right-handed alpha
Helix 25	AC7	4	235	249	Right-handed alpha
Helix 26	AC8	4	251	263	Right-handed alpha
Helix 27	AC9	4	269	283	Right-handed alpha
Helix 28	AD1	4	286	299	Right-handed alpha
Helix 29	AD2	4	303	317	Right-handed alpha
Helix 30	AD3	4	321	334	Right-handed alpha
Helix 31	AD4	4	338	350	Right-handed alpha
Helix 32	AD5	4	353	368	Right-handed alpha
Helix 33	AD6	4	371	385	Right-handed alpha
Helix 34	AD7	4	389	402	Right-handed alpha
Helix 35	AD8	4	412	423	Right-handed alpha
Helix 36	AD9	5	119	133	Right-handed alpha
Helix 37	AE1	5	239	260	Right-handed alpha
Helix 38	AE2	5	298	302	Right-handed 310
Helix 39	AE3	5	332	337	Right-handed alpha
Helix 40	AE4	7	336	368	Right-handed alpha
Helix 41	AE5	7	516	528	Right-handed alpha
Helix 42	AE6	7	569	588	Right-handed alpha
Helix 43	AE7	7	600	634	Right-handed alpha
Helix 44	AE8	7	635	639	Right-handed 310
Helix 45	AE9	7	643	661	Right-handed alpha
Helix 46	AF1	7	662	684	Right-handed alpha
Helix 47	AF2	7	692	703	Right-handed alpha
Helix 48	AF3	7	704	715	Right-handed alpha
Helix 49	AF4	8	2	13	Right-handed alpha
Helix 50	AF5	8	17	30	Right-handed alpha
Helix 51	AF6	8	33	48	Right-handed alpha
Helix 52	AF7	8	51	55	Right-handed 310
Helix 53	AF8	8	60	65	Right-handed alpha
Helix 54	AF9	8	120	126	Right-handed alpha
Helix 55	AG1	8	167	172	Right-handed alpha
Helix 56	AG2	8	174	188	Right-handed alpha
Helix 57	AG3	8	191	206	Right-handed alpha
Helix 58	AG4	8	210	225	Right-handed alpha
Helix 59	AG5	8	227	241	Right-handed alpha
Helix 60	AG6	8	243	257	Right-handed alpha
Helix 61	AG7	8	259	274	Right-handed alpha
Helix 62	AG8	8	277	291	Right-handed alpha
Helix 63	AG9	8	293	308	Right-handed alpha
Helix 64	AH1	8	311	325	Right-handed alpha
Helix 65	AH2	8	327	341	Right-handed alpha
Helix 66	AH3	8	345	359	Right-handed alpha
Helix 67	AH4	8	365	376	Right-handed alpha
Helix 68	AH5	8	379	397	Right-handed alpha
Helix 69	AH6	8	398	413	Right-handed alpha
Helix 70	AH7	8	416	431	Right-handed alpha
Helix 71	AH8	8	432	447	Right-handed alpha
Helix 72	AH9	8	451	465	Right-handed alpha
Helix 73	AI1	8	466	481	Right-handed alpha
Helix 74	AI2	8	485	498	Right-handed alpha
Helix 75	AI3	9	64	66	Right-handed 310
Helix 76	AI4	9	207	213	Right-handed alpha
Helix 77	AI5	9	377	396	Right-handed alpha
Helix 78	AI6	9	530	533	Right-handed 310
Helix 79	AI7	9	558	563	Right-handed alpha
Helix 80	AI8	9	605	627	Right-handed alpha
Helix 81	AI9	9	645	686	Right-handed alpha
Helix 82	AJ1	9	694	742	Right-handed alpha
Helix 83	AJ2	9	745	757	Right-handed alpha
Helix 84	AJ3	9	767	783	Right-handed alpha
Helix 85	AJ4	9	787	794	Right-handed alpha
Helix 86	AJ5	9	805	821	Right-handed alpha
Helix 87	AJ6	3	29	36	Right-handed alpha
Helix 88	AJ7	3	73	85	Right-handed 310
Helix 89	AJ8	3	101	114	Right-handed alpha
Helix 90	AJ9	3	139	148	Right-handed alpha
Helix 91	AK1	3	169	183	Right-handed alpha

There are 50 sheets in PDB entry 6VBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	3	9	first strand
Strand 2	1	395	402	anti-parallel
Strand 3	1	387	392	anti-parallel
Strand 4	1	373	379	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	21	25	first strand
Strand 2	1	32	38	anti-parallel
Strand 3	1	47	52	anti-parallel
Strand 4	1	55	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	66	72	first strand
Strand 2	1	83	88	anti-parallel
Strand 3	1	91	95	anti-parallel
Strand 4	1	100	105	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	200	207	first strand
Strand 2	1	217	223	anti-parallel
Strand 3	1	227	231	anti-parallel
Strand 4	1	238	243	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	248	256	first strand
Strand 2	1	260	267	anti-parallel
Strand 3	1	271	275	anti-parallel
Strand 4	1	285	287	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	292	297	first strand
Strand 2	1	301	306	anti-parallel
Strand 3	1	310	315	anti-parallel
Strand 4	1	320	325	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	330	332	first strand
Strand 2	1	349	350	anti-parallel
Strand 3	1	354	358	anti-parallel
Strand 4	1	363	368	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	335	338	first strand
Strand 2	1	343	346	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	487	493	first strand
Strand 2	1	498	506	anti-parallel
Strand 3	1	545	553	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	534	536	first strand
Strand 2	1	517	522	anti-parallel
Strand 3	1	563	570	anti-parallel
Strand 4	1	578	583	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	6	9	first strand
Strand 2	2	313	317	anti-parallel
Strand 3	2	305	309	anti-parallel
Strand 4	2	289	293	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	19	22	first strand
Strand 2	2	30	35	anti-parallel
Strand 3	2	39	43	anti-parallel
Strand 4	2	66	69	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	75	81	first strand
Strand 2	2	91	96	anti-parallel
Strand 3	2	99	104	anti-parallel
Strand 4	2	109	114	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	138	139	first strand
Strand 2	2	143	147	anti-parallel
Strand 3	2	153	158	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	163	169	first strand
Strand 2	2	178	183	anti-parallel
Strand 3	2	187	191	anti-parallel
Strand 4	2	196	201	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	208	211	first strand
Strand 2	2	217	220	anti-parallel
Strand 3	2	225	229	anti-parallel
Strand 4	2	234	239	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	246	250	first strand
Strand 2	2	259	263	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	269	271	first strand
Strand 2	2	281	283	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	377	378	first strand
Strand 2	7	373	374	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	383	390	first strand
Strand 2	2	399	406	anti-parallel
Strand 3	2	441	445	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	427	430	first strand
Strand 2	2	411	418	anti-parallel
Strand 3	2	453	462	anti-parallel
Strand 4	2	468	478	anti-parallel
Strand 5	7	480	488	anti-parallel
Strand 6	7	466	474	anti-parallel
Strand 7	7	404	411	anti-parallel
Strand 8	7	442	446	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	485	487	first strand
Strand 2	2	532	536	anti-parallel
Strand 3	2	543	548	anti-parallel
Strand 4	2	553	556	anti-parallel
Strand 5	2	498	502	anti-parallel
Strand 6	2	583	585	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	13	15	first strand
Strand 2	5	68	72	anti-parallel
Strand 3	5	56	60	anti-parallel
Strand 4	5	49	52	anti-parallel
Strand 5	5	32	35	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	37	40	first strand
Strand 2	5	105	112	anti-parallel
Strand 3	5	94	100	anti-parallel
Strand 4	5	76	81	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	141	142	first strand
Strand 2	5	199	202	anti-parallel
Strand 3	5	186	189	anti-parallel
Strand 4	5	178	183	anti-parallel
Strand 5	5	160	167	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	206	210	first strand
Strand 2	5	221	224	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	314	316	first strand
Strand 2	5	323	325	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	6	12	first strand
Strand 2	7	313	318	anti-parallel
Strand 3	7	304	309	anti-parallel
Strand 4	7	289	293	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	21	24	first strand
Strand 2	7	34	38	anti-parallel
Strand 3	7	44	47	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	69	72	first strand
Strand 2	7	81	85	anti-parallel
Strand 3	7	90	93	anti-parallel
Strand 4	7	99	103	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	114	117	first strand
Strand 2	7	120	124	anti-parallel
Strand 3	7	128	133	anti-parallel
Strand 4	7	137	142	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	147	152	first strand
Strand 2	7	163	167	anti-parallel
Strand 3	7	171	176	anti-parallel
Strand 4	7	179	185	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	190	193	first strand
Strand 2	7	209	211	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	220	221	first strand
Strand 2	7	226	227	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	244	247	first strand
Strand 2	7	256	259	anti-parallel
Strand 3	7	266	270	anti-parallel
Strand 4	7	278	283	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	325	326	first strand
Strand 2	3	157	162	anti-parallel
Strand 3	3	125	130	parallel
Strand 4	3	90	95	parallel
Strand 5	3	21	23	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	384	387	first strand
Strand 2	7	393	399	anti-parallel
Strand 3	7	453	459	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	540	543	first strand
Strand 2	7	556	559	anti-parallel
Strand 3	7	562	565	anti-parallel
Strand 4	7	509	512	anti-parallel
Strand 5	7	592	595	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	6	13	first strand
Strand 2	9	353	359	anti-parallel
Strand 3	9	344	348	anti-parallel
Strand 4	9	331	336	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	26	28	first strand
Strand 2	9	39	43	anti-parallel
Strand 3	9	48	52	anti-parallel
Strand 4	9	68	73	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	79	84	first strand
Strand 2	9	94	99	anti-parallel
Strand 3	9	102	106	anti-parallel
Strand 4	9	127	130	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	108	111	first strand
Strand 2	9	120	123	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	138	141	first strand
Strand 2	9	151	154	anti-parallel
Strand 3	9	161	164	anti-parallel
Strand 4	9	169	173	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	185	187	first strand
Strand 2	9	192	196	anti-parallel
Strand 3	9	201	206	anti-parallel
Strand 4	9	237	240	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	245	251	first strand
Strand 2	9	259	264	anti-parallel
Strand 3	9	268	271	anti-parallel
Strand 4	9	277	281	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	287	291	first strand
Strand 2	9	302	307	anti-parallel
Strand 3	9	311	316	anti-parallel
Strand 4	9	319	325	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	411	417	first strand
Strand 2	9	440	448	anti-parallel
Strand 3	9	482	491	anti-parallel
Strand 4	9	465	467	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	471	474	first strand
Strand 2	9	453	460	anti-parallel
Strand 3	9	501	510	anti-parallel
Strand 4	9	519	528	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	535	537	first strand
Strand 2	9	577	582	anti-parallel
Strand 3	9	587	591	anti-parallel
Strand 4	9	598	603	anti-parallel
Strand 5	9	546	551	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	18	19	first strand
Strand 2	3	64	67	parallel
Strand 3	3	56	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VBV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBV