Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VBW entry

There are 13 chains in PDB entry 6VBW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	T 8	A 14
L	A 55	A 93
K	C 1	A 61
A	THR 16	ILE 630
B	MET 1	HIS 349
C	MET 1	LYS 350
D	MET 1	LYS 350
F	MET 1	LYS 350
E	MET 1	LYS 350
G	MET 1	LYS 350
H	LYS 6	MET 169
I	MET 1	VAL 391
J	MET 1	VAL 391

There are112 helices in PDB entry 6VBW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	24	Right-handed alpha
Helix 2	AA2	A	39	44	Right-handed alpha
Helix 3	AA3	A	45	47	Right-handed 310
Helix 4	AA4	A	68	81	Right-handed alpha
Helix 5	AA5	A	126	130	Right-handed 310
Helix 6	AA6	A	173	184	Right-handed alpha
Helix 7	AA7	A	219	229	Right-handed alpha
Helix 8	AA8	A	248	253	Right-handed alpha
Helix 9	AA9	A	411	427	Right-handed alpha
Helix 10	AB1	A	492	499	Right-handed alpha
Helix 11	AB2	A	512	519	Right-handed 310
Helix 12	AB3	A	524	530	Right-handed alpha
Helix 13	AB4	A	549	560	Right-handed alpha
Helix 14	AB5	A	609	613	Right-handed alpha
Helix 15	AB6	B	105	123	Right-handed alpha
Helix 16	AB7	B	125	137	Right-handed alpha
Helix 17	AB8	B	139	146	Right-handed 310
Helix 18	AB9	B	177	183	Right-handed alpha
Helix 19	AC1	B	190	200	Right-handed alpha
Helix 20	AC2	B	260	269	Right-handed alpha
Helix 21	AC3	B	306	311	Right-handed alpha
Helix 22	AC4	B	314	319	Right-handed alpha
Helix 23	AC5	B	331	344	Right-handed alpha
Helix 24	AC6	C	61	66	Right-handed alpha
Helix 25	AC7	C	105	123	Right-handed alpha
Helix 26	AC8	C	125	138	Right-handed alpha
Helix 27	AC9	C	177	183	Right-handed alpha
Helix 28	AD1	C	187	200	Right-handed alpha
Helix 29	AD2	C	260	269	Right-handed alpha
Helix 30	AD3	C	305	310	Right-handed alpha
Helix 31	AD4	C	311	313	Right-handed 310
Helix 32	AD5	C	314	321	Right-handed alpha
Helix 33	AD6	C	328	344	Right-handed alpha
Helix 34	AD7	D	63	67	Right-handed 310
Helix 35	AD8	D	105	123	Right-handed alpha
Helix 36	AD9	D	125	138	Right-handed alpha
Helix 37	AE1	D	170	175	Right-handed alpha
Helix 38	AE2	D	177	183	Right-handed alpha
Helix 39	AE3	D	187	197	Right-handed alpha
Helix 40	AE4	D	260	269	Right-handed alpha
Helix 41	AE5	D	305	311	Right-handed alpha
Helix 42	AE6	D	314	322	Right-handed alpha
Helix 43	AE7	D	331	342	Right-handed alpha
Helix 44	AE8	F	105	123	Right-handed alpha
Helix 45	AE9	F	125	135	Right-handed alpha
Helix 46	AF1	F	177	183	Right-handed alpha
Helix 47	AF2	F	184	186	Right-handed 310
Helix 48	AF3	F	187	198	Right-handed alpha
Helix 49	AF4	F	260	269	Right-handed alpha
Helix 50	AF5	F	306	311	Right-handed alpha
Helix 51	AF6	F	314	321	Right-handed alpha
Helix 52	AF7	F	327	340	Right-handed alpha
Helix 53	AF8	E	95	99	Right-handed 310
Helix 54	AF9	E	105	113	Right-handed alpha
Helix 55	AG1	E	113	123	Right-handed alpha
Helix 56	AG2	E	125	138	Right-handed alpha
Helix 57	AG3	E	170	175	Right-handed alpha
Helix 58	AG4	E	177	182	Right-handed alpha
Helix 59	AG5	E	187	200	Right-handed alpha
Helix 60	AG6	E	260	269	Right-handed alpha
Helix 61	AG7	E	306	311	Right-handed alpha
Helix 62	AG8	E	312	321	Right-handed alpha
Helix 63	AG9	E	327	330	Right-handed 310
Helix 64	AH1	E	331	344	Right-handed alpha
Helix 65	AH2	G	105	123	Right-handed alpha
Helix 66	AH3	G	125	138	Right-handed alpha
Helix 67	AH4	G	170	175	Right-handed alpha
Helix 68	AH5	G	177	183	Right-handed alpha
Helix 69	AH6	G	187	200	Right-handed alpha
Helix 70	AH7	G	260	269	Right-handed alpha
Helix 71	AH8	G	305	311	Right-handed alpha
Helix 72	AH9	G	314	321	Right-handed alpha
Helix 73	AI1	G	327	340	Right-handed alpha
Helix 74	AI2	H	16	35	Right-handed alpha
Helix 75	AI3	H	71	80	Right-handed alpha
Helix 76	AI4	H	116	123	Right-handed alpha
Helix 77	AI5	I	13	25	Right-handed alpha
Helix 78	AI6	I	29	44	Right-handed alpha
Helix 79	AI7	I	56	60	Right-handed 310
Helix 80	AI8	I	67	82	Right-handed alpha
Helix 81	AI9	I	118	120	Right-handed 310
Helix 82	AJ1	I	139	144	Right-handed 310
Helix 83	AJ2	I	197	206	Right-handed alpha
Helix 84	AJ3	I	222	232	Right-handed alpha
Helix 85	AJ4	I	236	245	Right-handed alpha
Helix 86	AJ5	I	250	264	Right-handed alpha
Helix 87	AJ6	I	274	279	Right-handed alpha
Helix 88	AJ7	I	279	285	Right-handed alpha
Helix 89	AJ8	I	297	309	Right-handed alpha
Helix 90	AJ9	I	317	320	Right-handed 310
Helix 91	AK1	I	325	333	Right-handed alpha
Helix 92	AK2	I	335	345	Right-handed alpha
Helix 93	AK3	I	369	380	Right-handed alpha
Helix 94	AK4	J	13	25	Right-handed alpha
Helix 95	AK5	J	30	44	Right-handed alpha
Helix 96	AK6	J	48	52	Right-handed 310
Helix 97	AK7	J	56	60	Right-handed 310
Helix 98	AK8	J	67	82	Right-handed alpha
Helix 99	AK9	J	89	93	Right-handed 310
Helix 100	AL1	J	130	135	Right-handed alpha
Helix 101	AL2	J	139	144	Right-handed 310
Helix 102	AL3	J	197	204	Right-handed alpha
Helix 103	AL4	J	216	232	Right-handed alpha
Helix 104	AL5	J	237	244	Right-handed alpha
Helix 105	AL6	J	251	265	Right-handed alpha
Helix 106	AL7	J	274	280	Right-handed alpha
Helix 107	AL8	J	282	286	Right-handed 310
Helix 108	AL9	J	297	309	Right-handed alpha
Helix 109	AM1	J	317	320	Right-handed 310
Helix 110	AM2	J	325	333	Right-handed alpha
Helix 111	AM3	J	335	345	Right-handed alpha
Helix 112	AM4	J	369	380	Right-handed alpha

There are 51 sheets in PDB entry 6VBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	122	123	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	217	218	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	189	191	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	204	first strand
Strand 2	A	210	215	anti-parallel
Strand 3	A	587	598	parallel
Strand 4	A	564	572	anti-parallel
Strand 5	A	622	627	anti-parallel
Strand 6	A	614	619	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	260	261	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	504	first strand
Strand 2	A	507	510	anti-parallel
Strand 3	A	389	395	anti-parallel
Strand 4	A	478	482	anti-parallel
Strand 5	A	439	443	anti-parallel
Strand 6	A	538	539	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	450	first strand
Strand 2	A	472	475	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	7	9	anti-parallel
Strand 3	B	345	346	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	29	31	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	41	first strand
Strand 2	B	69	75	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	209	214	anti-parallel
Strand 3	B	151	155	anti-parallel
Strand 4	B	167	171	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	254	257	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	272	first strand
Strand 2	B	282	283	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	290	first strand
Strand 2	B	295	296	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	7	9	anti-parallel
Strand 3	C	345	346	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	84	89	anti-parallel
Strand 4	C	209	214	anti-parallel
Strand 5	C	151	155	anti-parallel
Strand 6	C	167	171	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	255	259	anti-parallel
Strand 4	C	248	250	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	41	first strand
Strand 2	C	69	75	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	295	296	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	7	9	anti-parallel
Strand 3	D	345	346	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	84	92	anti-parallel
Strand 4	D	206	214	anti-parallel
Strand 5	D	151	158	anti-parallel
Strand 6	D	166	168	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	254	259	anti-parallel
Strand 4	D	248	251	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	41	first strand
Strand 2	D	69	75	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	282	283	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	290	first strand
Strand 2	D	295	296	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	103	first strand
Strand 2	F	7	9	anti-parallel
Strand 3	F	345	346	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	31	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	84	92	anti-parallel
Strand 4	F	206	214	anti-parallel
Strand 5	F	151	158	anti-parallel
Strand 6	F	166	171	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	31	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	254	259	anti-parallel
Strand 4	F	248	251	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	41	first strand
Strand 2	F	69	75	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	272	first strand
Strand 2	F	282	283	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	289	290	first strand
Strand 2	F	295	296	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	7	9	anti-parallel
Strand 3	E	345	346	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	84	93	anti-parallel
Strand 3	E	18	24	anti-parallel
Strand 4	E	206	214	first strand
Strand 5	E	151	156	anti-parallel
Strand 6	E	167	168	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	31	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	84	93	anti-parallel
Strand 4	E	255	259	first strand
Strand 5	E	248	250	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	41	first strand
Strand 2	E	69	75	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	272	first strand
Strand 2	E	282	283	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	290	first strand
Strand 2	E	295	296	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	102	103	first strand
Strand 2	G	7	9	anti-parallel
Strand 3	G	345	346	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	14	first strand
Strand 2	G	84	93	anti-parallel
Strand 3	G	18	24	anti-parallel
Strand 4	G	206	213	first strand
Strand 5	G	152	156	anti-parallel
Strand 6	G	166	168	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	31	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	84	93	anti-parallel
Strand 4	G	255	259	first strand
Strand 5	G	248	250	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	38	first strand
Strand 2	H	144	145	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	270	272	first strand
Strand 2	G	282	283	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	289	290	first strand
Strand 2	G	295	296	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	9	first strand
Strand 2	H	55	59	anti-parallel
Strand 3	H	41	43	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	102	103	first strand
Strand 2	H	167	168	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	155	first strand
Strand 2	H	162	164	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	95	97	first strand
Strand 2	I	107	109	anti-parallel
Strand 3	I	114	116	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	149	150	first strand
Strand 2	I	155	156	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	322	323	first strand
Strand 2	I	367	368	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	95	100	first strand
Strand 2	J	106	110	anti-parallel
Strand 3	J	113	116	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	322	323	first strand
Strand 2	J	367	368	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VBW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBW