Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VBY entry

There is 1 chain in PDB entry 6VBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 32ALA 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6VBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 50Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
83 92Right-handed alpha
Helix 4
AA4
A
104 112Right-handed alpha
Helix 5
AA5
A
123 138Right-handed alpha
Helix 6
AA6
A
139 164Right-handed alpha
Helix 7
AA7
A
165 169Right-handed 310
Helix 8
AA8
A
174 192Right-handed alpha
Helix 9
AA9
A
200 219Right-handed alpha
Helix 10
AB1
A
222 228Right-handed alpha
Helix 11
AB2
A
229 234Right-handed 310
Helix 12
AB3
A
235 257Right-handed alpha
Helix 13
AB4
A
257 269Right-handed alpha
Helix 14
AB5
A
273 284Right-handed alpha
Helix 15
AB6
A
288 303Right-handed alpha
Helix 16
AB7
A
303 321Right-handed alpha
Helix 17
AB8
A
321 337Right-handed alpha
Helix 18
AB9
A
343 349Right-handed 310
Helix 19
AC1
A
350 364Right-handed alpha
Helix 20
AC2
A
395 402Right-handed alpha
Helix 21
AC3
A
413 419Right-handed 310
Helix 22
AC4
A
445 463Right-handed alpha
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There are 4 sheets in PDB entry 6VBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
391 394parallel
Strand 4
A
373 374anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
493 498anti-parallel
Strand 3
A
464 467anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 381first strand
Strand 2
A
384 386anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 481first strand
Strand 2
A
486 488anti-parallel
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