Analysis of interatomic Contacts of Structural Units in PDB entry:
6VBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VBZ entry

There are 2 chains in PDB entry 6VBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 183PRO 454
B
 GLN 182PRO 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6VBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
187 191Right-handed 310
Helix 2
AA2
A
228 246Right-handed alpha
Helix 3
AA3
A
279 287Right-handed alpha
Helix 4
AA4
A
291 312Right-handed alpha
Helix 5
AA5
A
359 364Right-handed 310
Helix 6
AA6
A
365 371Right-handed alpha
Helix 7
AA7
A
377 395Right-handed alpha
Helix 8
AA8
A
403 413Right-handed alpha
Helix 9
AA9
A
425 436Right-handed alpha
Helix 10
AB1
A
439 443Right-handed 310
Helix 11
AB2
A
445 452Right-handed alpha
Helix 12
AB3
B
187 191Right-handed 310
Helix 13
AB4
B
228 246Right-handed alpha
Helix 14
AB5
B
279 287Right-handed alpha
Helix 15
AB6
B
291 311Right-handed alpha
Helix 16
AB7
B
328 330Right-handed 310
Helix 17
AB8
B
359 364Right-handed 310
Helix 18
AB9
B
365 371Right-handed alpha
Helix 19
AC1
B
377 395Right-handed alpha
Helix 20
AC2
B
403 412Right-handed alpha
Helix 21
AC3
B
425 436Right-handed alpha
Helix 22
AC4
B
439 443Right-handed 310
Helix 23
AC5
B
445 452Right-handed alpha
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There are 4 sheets in PDB entry 6VBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 200first strand
Strand 2
A
205 211anti-parallel
Strand 3
A
214 220anti-parallel
Strand 4
A
267 273anti-parallel
Strand 5
A
254 260anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 327first strand
Strand 2
A
331 334anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 200first strand
Strand 2
B
205 211anti-parallel
Strand 3
B
214 220anti-parallel
Strand 4
B
267 273anti-parallel
Strand 5
B
254 260anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 327first strand
Strand 2
B
331 334anti-parallel
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