Analysis of interatomic Contacts of Structural Units in PDB entry:
6VC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VC0 entry

There are 3 chains in PDB entry 6VC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 190PHE 468
B
 GLN 190HIS 469
C
 GLN 190TYR 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6VC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
195 197Right-handed 310
Helix 2
AA2
A
233 238Right-handed alpha
Helix 3
AA3
A
238 255Right-handed alpha
Helix 4
AA4
A
288 295Right-handed alpha
Helix 5
AA5
A
300 321Right-handed alpha
Helix 6
AA6
A
371 376Right-handed 310
Helix 7
AA7
A
377 383Right-handed alpha
Helix 8
AA8
A
389 407Right-handed alpha
Helix 9
AA9
A
415 425Right-handed alpha
Helix 10
AB1
A
437 448Right-handed alpha
Helix 11
AB2
A
451 455Right-handed 310
Helix 12
AB3
A
457 465Right-handed alpha
Helix 13
AB4
B
195 197Right-handed 310
Helix 14
AB5
B
233 238Right-handed alpha
Helix 15
AB6
B
238 255Right-handed alpha
Helix 16
AB7
B
288 296Right-handed alpha
Helix 17
AB8
B
300 321Right-handed alpha
Helix 18
AB9
B
371 376Right-handed 310
Helix 19
AC1
B
377 383Right-handed alpha
Helix 20
AC2
B
389 407Right-handed alpha
Helix 21
AC3
B
415 425Right-handed alpha
Helix 22
AC4
B
437 448Right-handed alpha
Helix 23
AC5
B
451 455Right-handed 310
Helix 24
AC6
B
457 465Right-handed alpha
Helix 25
AC7
B
466 468Right-handed 310
Helix 26
AC8
C
195 197Right-handed 310
Helix 27
AC9
C
238 255Right-handed alpha
Helix 28
AD1
C
289 296Right-handed alpha
Helix 29
AD2
C
300 321Right-handed alpha
Helix 30
AD3
C
348 352Right-handed 310
Helix 31
AD4
C
371 376Right-handed 310
Helix 32
AD5
C
377 383Right-handed alpha
Helix 33
AD6
C
389 407Right-handed alpha
Helix 34
AD7
C
415 425Right-handed alpha
Helix 35
AD8
C
437 448Right-handed alpha
Helix 36
AD9
C
451 455Right-handed 310
Helix 37
AE1
C
457 473Right-handed alpha
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There are 8 sheets in PDB entry 6VC0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
263 269parallel
Strand 3
A
276 281anti-parallel
Strand 4
A
223 230anti-parallel
Strand 5
A
213 220anti-parallel
Strand 6
A
199 200anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
263 269parallel
Strand 3
A
276 281anti-parallel
Strand 4
A
223 230anti-parallel
Strand 5
A
213 220anti-parallel
Strand 6
A
206 209anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 338first strand
Strand 2
A
344 346anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
B
263 269parallel
Strand 3
B
276 282anti-parallel
Strand 4
B
223 230anti-parallel
Strand 5
B
213 220anti-parallel
Strand 6
B
199 200anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
B
263 269parallel
Strand 3
B
276 282anti-parallel
Strand 4
B
223 230anti-parallel
Strand 5
B
213 220anti-parallel
Strand 6
B
206 209anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 338first strand
Strand 2
B
344 346anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 194first strand
Strand 2
C
263 269parallel
Strand 3
C
276 281anti-parallel
Strand 4
C
223 230anti-parallel
Strand 5
C
213 220anti-parallel
Strand 6
C
199 200anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
287 288first strand
Strand 2
C
336 338anti-parallel
Strand 3
C
344 346anti-parallel
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