Analysis of interatomic Contacts of Structural Units in PDB entry:
6VC5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VC5 entry

There is 1 chain in PDB entry 6VC5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ALA 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6VC5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 13Right-handed alpha
Helix 2
AA2
A
21 25Right-handed 310
Helix 3
AA3
A
30 44Right-handed alpha
Helix 4
AA4
A
45 60Right-handed alpha
Helix 5
AA5
A
86 104Right-handed alpha
Helix 6
AA6
A
106 124Right-handed alpha
Helix 7
AA7
A
150 154Right-handed 310
Helix 8
AA8
A
155 167Right-handed alpha
Helix 9
AA9
A
168 185Right-handed alpha
Helix 10
AB1
A
221 230Right-handed alpha
Helix 11
AB2
A
234 249Right-handed alpha
Helix 12
AB3
A
270 280Right-handed alpha
Helix 13
AB4
A
290 294Right-handed 310
Helix 14
AB5
A
296 311Right-handed alpha
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There are 4 sheets in PDB entry 6VC5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
71 73anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
131 134anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
197 200anti-parallel
Strand 3
A
206 208anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
257 258anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il