Analysis of interatomic Contacts of Structural Units in PDB entry:
6VC7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VC7 entry

There are 4 chains in PDB entry 6VC7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 243	ASN 586
B	SER 243	ASN 586
C	SER 243	ASN 586
D	SER 243	LEU 473

There are 86 helices in PDB entry 6VC7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	274	279	Right-handed alpha
Helix 2	AA2	A	279	289	Right-handed alpha
Helix 3	AA3	A	301	312	Right-handed alpha
Helix 4	AA4	A	314	316	Right-handed 310
Helix 5	AA5	A	317	325	Right-handed alpha
Helix 6	AA6	A	328	337	Right-handed alpha
Helix 7	AA7	A	351	356	Right-handed alpha
Helix 8	AA8	A	357	361	Right-handed 310
Helix 9	AA9	A	371	387	Right-handed alpha
Helix 10	AB1	A	409	437	Right-handed alpha
Helix 11	AB2	A	457	461	Right-handed 310
Helix 12	AB3	A	465	470	Right-handed alpha
Helix 13	AB4	A	491	502	Right-handed alpha
Helix 14	AB5	A	508	512	Right-handed 310
Helix 15	AB6	A	569	581	Right-handed alpha
Helix 16	AB7	B	274	279	Right-handed alpha
Helix 17	AB8	B	279	288	Right-handed alpha
Helix 18	AB9	B	301	312	Right-handed alpha
Helix 19	AC1	B	314	316	Right-handed 310
Helix 20	AC2	B	317	325	Right-handed alpha
Helix 21	AC3	B	328	337	Right-handed alpha
Helix 22	AC4	B	351	357	Right-handed alpha
Helix 23	AC5	B	371	384	Right-handed alpha
Helix 24	AC6	B	408	437	Right-handed alpha
Helix 25	AC7	B	457	461	Right-handed 310
Helix 26	AC8	B	465	470	Right-handed alpha
Helix 27	AC9	B	491	502	Right-handed alpha
Helix 28	AD1	B	508	512	Right-handed 310
Helix 29	AD2	B	569	581	Right-handed alpha
Helix 30	AD3	C	274	279	Right-handed alpha
Helix 31	AD4	C	279	288	Right-handed alpha
Helix 32	AD5	C	301	312	Right-handed alpha
Helix 33	AD6	C	314	316	Right-handed 310
Helix 34	AD7	C	317	325	Right-handed alpha
Helix 35	AD8	C	328	337	Right-handed alpha
Helix 36	AD9	C	351	357	Right-handed alpha
Helix 37	AE1	C	358	361	Right-handed 310
Helix 38	AE2	C	371	387	Right-handed alpha
Helix 39	AE3	C	408	437	Right-handed alpha
Helix 40	AE4	C	465	470	Right-handed alpha
Helix 41	AE5	C	491	502	Right-handed alpha
Helix 42	AE6	C	508	512	Right-handed 310
Helix 43	AE7	C	569	581	Right-handed alpha
Helix 44	AE8	D	274	279	Right-handed alpha
Helix 45	AE9	D	279	289	Right-handed alpha
Helix 46	AF1	D	301	312	Right-handed alpha
Helix 47	AF2	D	314	316	Right-handed 310
Helix 48	AF3	D	317	325	Right-handed alpha
Helix 49	AF4	D	328	337	Right-handed alpha
Helix 50	AF5	D	351	356	Right-handed alpha
Helix 51	AF6	D	357	362	Right-handed alpha
Helix 52	AF7	D	371	384	Right-handed alpha
Helix 53	AF8	D	408	437	Right-handed alpha
Helix 54	AF9	D	457	461	Right-handed 310
Helix 55	AG1	D	465	470	Right-handed alpha
Helix 56	AG2	D	491	502	Right-handed alpha
Helix 57	AG3	D	508	512	Right-handed 310
Helix 58	AG4	D	569	581	Right-handed alpha
Helix 59	AG5	E	274	279	Right-handed alpha
Helix 60	AG6	E	279	288	Right-handed alpha
Helix 61	AG7	E	301	312	Right-handed alpha
Helix 62	AG8	E	314	316	Right-handed 310
Helix 63	AG9	E	317	325	Right-handed alpha
Helix 64	AH1	E	328	337	Right-handed alpha
Helix 65	AH2	E	351	357	Right-handed alpha
Helix 66	AH3	E	371	384	Right-handed alpha
Helix 67	AH4	E	408	437	Right-handed alpha
Helix 68	AH5	E	457	461	Right-handed 310
Helix 69	AH6	E	465	470	Right-handed alpha
Helix 70	AH7	E	491	502	Right-handed alpha
Helix 71	AH8	E	508	512	Right-handed 310
Helix 72	AH9	E	569	581	Right-handed alpha
Helix 73	AI1	F	274	279	Right-handed alpha
Helix 74	AI2	F	279	289	Right-handed alpha
Helix 75	AI3	F	301	312	Right-handed alpha
Helix 76	AI4	F	314	316	Right-handed 310
Helix 77	AI5	F	317	325	Right-handed alpha
Helix 78	AI6	F	328	337	Right-handed alpha
Helix 79	AI7	F	351	356	Right-handed alpha
Helix 80	AI8	F	357	361	Right-handed 310
Helix 81	AI9	F	371	383	Right-handed alpha
Helix 82	AJ1	F	411	437	Right-handed alpha
Helix 83	AJ2	F	465	470	Right-handed alpha
Helix 84	AJ3	F	491	502	Right-handed alpha
Helix 85	AJ4	F	508	512	Right-handed 310
Helix 86	AJ5	F	569	581	Right-handed alpha

There are 18 sheets in PDB entry 6VC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	345	first strand
Strand 2	A	392	399	parallel
Strand 3	A	261	270	parallel
Strand 4	A	443	452	parallel
Strand 5	A	473	476	anti-parallel
Strand 6	A	290	292	anti-parallel
Strand 7	A	483	485	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	489	490	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	531	first strand
Strand 2	A	535	539	anti-parallel
Strand 3	A	544	548	anti-parallel
Strand 4	A	553	556	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	345	first strand
Strand 2	B	392	399	parallel
Strand 3	B	262	270	parallel
Strand 4	B	444	452	parallel
Strand 5	B	473	476	anti-parallel
Strand 6	B	290	292	anti-parallel
Strand 7	B	483	485	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	489	490	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	531	first strand
Strand 2	B	535	539	anti-parallel
Strand 3	B	544	548	anti-parallel
Strand 4	B	553	556	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	345	first strand
Strand 2	C	393	399	parallel
Strand 3	C	261	270	parallel
Strand 4	C	443	452	parallel
Strand 5	C	473	476	anti-parallel
Strand 6	C	290	292	anti-parallel
Strand 7	C	483	485	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	296	first strand
Strand 2	C	489	490	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	531	first strand
Strand 2	C	535	539	anti-parallel
Strand 3	C	544	548	anti-parallel
Strand 4	C	553	556	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	345	first strand
Strand 2	D	393	399	parallel
Strand 3	D	262	270	parallel
Strand 4	D	444	452	parallel
Strand 5	D	473	476	anti-parallel
Strand 6	D	290	292	anti-parallel
Strand 7	D	483	485	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	296	first strand
Strand 2	D	489	490	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	531	first strand
Strand 2	D	535	539	anti-parallel
Strand 3	D	544	548	anti-parallel
Strand 4	D	553	556	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	345	first strand
Strand 2	E	392	399	parallel
Strand 3	E	261	270	parallel
Strand 4	E	443	452	parallel
Strand 5	E	473	476	anti-parallel
Strand 6	E	290	292	anti-parallel
Strand 7	E	483	485	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	295	296	first strand
Strand 2	E	489	490	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	528	531	first strand
Strand 2	E	535	539	anti-parallel
Strand 3	E	544	548	anti-parallel
Strand 4	E	553	556	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	345	first strand
Strand 2	F	392	399	parallel
Strand 3	F	261	270	parallel
Strand 4	F	443	452	parallel
Strand 5	F	473	476	anti-parallel
Strand 6	F	290	292	anti-parallel
Strand 7	F	483	485	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	295	296	first strand
Strand 2	F	489	490	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	528	531	first strand
Strand 2	F	535	539	anti-parallel
Strand 3	F	544	548	anti-parallel
Strand 4	F	553	556	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VC7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VC7