Analysis of interatomic Contacts of Structural Units in PDB entry:
6VC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VC9 entry

There are 3 chains in PDB entry 6VC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 2SER 119
L
 GLU 1LYS 108
A
 TRP 27SER 549
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6VC9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
63 65Right-handed 310
Helix 2
AA2
H
86 90Right-handed 310
Helix 3
AA3
L
30 32Right-handed 310
Helix 4
AA4
A
53 57Right-handed 310
Helix 5
AA5
A
60 75Right-handed alpha
Helix 6
AA6
A
90 97Right-handed alpha
Helix 7
AA7
A
98 108Right-handed alpha
Helix 8
AA8
A
117 121Right-handed 310
Helix 9
AA9
A
124 129Right-handed alpha
Helix 10
AB1
A
130 135Right-handed alpha
Helix 11
AB2
A
149 155Right-handed alpha
Helix 12
AB3
A
180 185Right-handed alpha
Helix 13
AB4
A
195 210Right-handed alpha
Helix 14
AB5
A
222 233Right-handed alpha
Helix 15
AB6
A
317 336Right-handed alpha
Helix 16
AB7
A
349 354Right-handed alpha
Helix 17
AB8
A
358 372Right-handed alpha
Helix 18
AB9
A
392 394Right-handed 310
Helix 19
AC1
A
408 415Right-handed alpha
Helix 20
AC2
A
428 438Right-handed alpha
Helix 21
AC3
A
499 503Right-handed alpha
Helix 22
AC4
A
504 507Right-handed 310
Helix 23
AC5
A
508 515Right-handed alpha
Helix 24
AC6
A
524 536Right-handed alpha
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There are 12 sheets in PDB entry 6VC9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 7first strand
Strand 2
H
19 24anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 59first strand
Strand 2
H
46 52anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
91 97anti-parallel
Strand 5
H
113 115anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 107parallel
Strand 3
L
85 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 50anti-parallel
Strand 6
L
54 55anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 107parallel
Strand 3
L
85 91anti-parallel
Strand 4
L
98 99anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
112 114parallel
Strand 3
A
78 82parallel
Strand 4
A
28 34parallel
Strand 5
A
286 294anti-parallel
Strand 6
A
300 305anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
112 114parallel
Strand 3
A
78 82parallel
Strand 4
A
28 34parallel
Strand 5
A
286 294anti-parallel
Strand 6
A
308 309anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
191 193anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 166first strand
Strand 2
A
169 177anti-parallel
Strand 3
A
215 220parallel
Strand 4
A
238 240parallel
Strand 5
A
274 278parallel
Strand 6
A
265 268anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 407first strand
Strand 2
A
338 342anti-parallel
Strand 3
A
537 538parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 453first strand
Strand 2
A
386 390anti-parallel
Strand 3
A
492 498parallel
Strand 4
A
420 427anti-parallel
Strand 5
A
517 523anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
469 475anti-parallel
Strand 3
A
455 459anti-parallel
Strand 4
A
546 548parallel
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