Analysis of interatomic Contacts of Structural Units in PDB entry:
6VCB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VCB entry

There are 6 chains in PDB entry 6VCB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	THR 29	ARG 421
P	HIS 7	GLY 37
A	THR 9	LEU 394
B	SER 2	ASN 340
G	ASN 5	GLU 63
N	GLN 1	SER 128

There are 31 helices in PDB entry 6VCB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	31	51	Right-handed alpha
Helix 2	AA2	R	89	93	Right-handed 310
Helix 3	AA3	R	137	168	Right-handed alpha
Helix 4	AA4	R	174	206	Right-handed alpha
Helix 5	AA5	R	216	223	Right-handed alpha
Helix 6	AA6	R	224	256	Right-handed alpha
Helix 7	AA7	R	261	274	Right-handed alpha
Helix 8	AA8	R	275	291	Right-handed alpha
Helix 9	AA9	R	303	336	Right-handed alpha
Helix 10	AB1	R	345	361	Right-handed alpha
Helix 11	AB2	R	362	368	Right-handed 310
Helix 12	AB3	R	377	393	Right-handed alpha
Helix 13	AB4	R	393	402	Right-handed alpha
Helix 14	AB5	R	406	421	Right-handed alpha
Helix 15	AB6	P	8	34	Right-handed alpha
Helix 16	AB7	A	10	38	Right-handed alpha
Helix 17	AB8	A	53	58	Right-handed alpha
Helix 18	AB9	A	234	238	Right-handed 310
Helix 19	AC1	A	264	279	Right-handed alpha
Helix 20	AC2	A	293	302	Right-handed alpha
Helix 21	AC3	A	308	312	Right-handed alpha
Helix 22	AC4	A	313	317	Right-handed 310
Helix 23	AC5	A	331	352	Right-handed alpha
Helix 24	AC6	A	370	391	Right-handed alpha
Helix 25	AC7	B	3	25	Right-handed alpha
Helix 26	AC8	B	29	33	Right-handed 310
Helix 27	AC9	G	6	24	Right-handed alpha
Helix 28	AD1	G	29	44	Right-handed alpha
Helix 29	AD2	N	28	32	Right-handed 310
Helix 30	AD3	N	62	65	Right-handed 310
Helix 31	AD4	N	87	91	Right-handed 310

There are 12 sheets in PDB entry 6VCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	65	66	first strand
Strand 2	R	71	72	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	79	84	first strand
Strand 2	R	99	104	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	41	45	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	360	361	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	208	210	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	59	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	92	95	anti-parallel
Strand 5	N	122	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VCB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VCB