Analysis of interatomic Contacts of Structural Units in PDB entry:
6VCC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VCC entry

There are 12 chains in PDB entry 6VCC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 13	VAL 90
B	GLU 13	VAL 90
C	GLU 13	VAL 90
D	GLU 13	VAL 90
E	GLU 13	VAL 90
F	GLU 13	VAL 90
G	GLU 13	VAL 90
H	GLU 13	VAL 90
I	GLU 13	VAL 90
J	GLU 13	VAL 90
K	GLU 13	VAL 90
L	GLU 13	VAL 90

There are 21 helices in PDB entry 6VCC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	46	Right-handed alpha
Helix 2	AA2	A	80	84	Right-handed 310
Helix 3	AA3	B	39	46	Right-handed alpha
Helix 4	AA4	B	80	84	Right-handed 310
Helix 5	AA5	C	39	46	Right-handed alpha
Helix 6	AA6	C	80	84	Right-handed 310
Helix 7	AA7	D	39	46	Right-handed alpha
Helix 8	AA8	E	39	46	Right-handed alpha
Helix 9	AA9	F	39	46	Right-handed alpha
Helix 10	AB1	F	80	84	Right-handed 310
Helix 11	AB2	G	39	48	Right-handed alpha
Helix 12	AB3	G	80	84	Right-handed 310
Helix 13	AB4	H	39	48	Right-handed alpha
Helix 14	AB5	H	80	84	Right-handed 310
Helix 15	AB6	I	39	45	Right-handed alpha
Helix 16	AB7	I	80	84	Right-handed 310
Helix 17	AB8	J	39	48	Right-handed alpha
Helix 18	AB9	J	80	84	Right-handed 310
Helix 19	AC1	K	39	45	Right-handed alpha
Helix 20	AC2	K	80	84	Right-handed 310
Helix 21	AC3	L	39	48	Right-handed alpha

There are 8 sheets in PDB entry 6VCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	70	first strand
Strand 2	A	55	61	anti-parallel
Strand 3	A	86	89	anti-parallel
Strand 4	A	14	18	parallel
Strand 5	A	27	31	anti-parallel
Strand 6	B	65	70	parallel
Strand 7	B	55	61	anti-parallel
Strand 8	B	87	89	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	18	first strand
Strand 2	B	27	31	anti-parallel
Strand 3	C	65	70	parallel
Strand 4	C	55	61	anti-parallel
Strand 5	C	87	89	anti-parallel

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There are 17 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	27	31	anti-parallel
Strand 3	D	65	70	parallel
Strand 4	D	56	61	anti-parallel
Strand 5	D	86	88	anti-parallel
Strand 6	D	14	18	parallel
Strand 7	D	27	31	anti-parallel
Strand 8	E	65	70	parallel
Strand 9	E	56	61	anti-parallel
Strand 10	E	86	88	anti-parallel
Strand 11	E	14	18	parallel
Strand 12	E	27	31	anti-parallel
Strand 13	F	65	70	parallel
Strand 14	F	56	61	anti-parallel
Strand 15	F	86	88	anti-parallel
Strand 16	F	14	18	parallel
Strand 17	F	27	31	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	18	first strand
Strand 2	G	27	31	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	89	first strand
Strand 2	G	55	61	anti-parallel
Strand 3	G	65	70	anti-parallel
Strand 4	H	27	31	parallel
Strand 5	H	14	15	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	18	first strand
Strand 2	H	86	89	parallel
Strand 3	H	55	61	anti-parallel
Strand 4	H	65	70	anti-parallel
Strand 5	I	27	31	parallel
Strand 6	I	14	18	anti-parallel
Strand 7	I	86	89	parallel
Strand 8	I	55	61	anti-parallel
Strand 9	I	65	70	anti-parallel
Strand 10	J	27	31	parallel
Strand 11	J	14	15	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	17	18	first strand
Strand 2	J	86	89	parallel
Strand 3	J	55	61	anti-parallel
Strand 4	J	65	70	anti-parallel
Strand 5	K	27	31	parallel
Strand 6	K	14	18	anti-parallel
Strand 7	K	86	89	parallel
Strand 8	K	55	61	anti-parallel
Strand 9	K	65	70	anti-parallel
Strand 10	L	27	31	parallel
Strand 11	L	14	15	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	18	first strand
Strand 2	L	86	89	parallel
Strand 3	L	55	61	anti-parallel
Strand 4	L	65	70	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VCC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VCC