Analysis of interatomic Contacts of Structural Units in PDB entry:
6VCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VCI entry

There are 2 chains in PDB entry 6VCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLY 159GLU 383
A
 GLY 159GLU 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6VCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
211 215Right-handed 310
Helix 2
AA2
C
243 245Right-handed 310
Helix 3
AA3
C
273 278Right-handed alpha
Helix 4
AA4
C
329 335Right-handed 310
Helix 5
AA5
C
356 361Right-handed alpha
Helix 6
AA6
A
209 215Right-handed 310
Helix 7
AA7
A
243 245Right-handed 310
Helix 8
AA8
A
273 278Right-handed alpha
Helix 9
AA9
A
317 319Right-handed 310
Helix 10
AB1
A
329 335Right-handed 310
Helix 11
AB2
A
356 361Right-handed alpha
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There are 4 sheets in PDB entry 6VCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 167first strand
Strand 2
C
201 207anti-parallel
Strand 3
C
184 194anti-parallel
Strand 4
C
178 181anti-parallel
Strand 5
C
247 253parallel
Strand 6
C
221 227anti-parallel
Strand 7
C
267 271parallel
Strand 8
C
161 167parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
281 287first strand
Strand 2
C
321 327anti-parallel
Strand 3
C
305 315anti-parallel
Strand 4
C
299 302anti-parallel
Strand 5
C
363 367parallel
Strand 6
C
340 344anti-parallel
Strand 7
C
376 381parallel
Strand 8
C
281 287parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 167first strand
Strand 2
A
200 207anti-parallel
Strand 3
A
184 195anti-parallel
Strand 4
A
178 181anti-parallel
Strand 5
A
247 253parallel
Strand 6
A
221 227anti-parallel
Strand 7
A
267 271parallel
Strand 8
A
161 167parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
281 287parallel
Strand 3
A
321 327anti-parallel
Strand 4
A
305 315anti-parallel
Strand 5
A
299 302anti-parallel
Strand 6
A
363 367parallel
Strand 7
A
340 344anti-parallel
Strand 8
A
380 381parallel
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