Analysis of interatomic Contacts of Structural Units in PDB entry:
6VCK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VCK entry

There are 2 chains in PDB entry 6VCK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LEU 274
B
 SER 0ALA 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6VCK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
76 87Right-handed alpha
Helix 3
AA3
A
171 181Right-handed alpha
Helix 4
AA4
A
217 231Right-handed alpha
Helix 5
AA5
B
45 58Right-handed alpha
Helix 6
AA6
B
61 63Right-handed 310
Helix 7
AA7
B
107 111Right-handed 310
Helix 8
AA8
B
130 136Right-handed alpha
Helix 9
AA9
B
137 139Right-handed 310
Helix 10
AB1
B
140 157Right-handed alpha
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There are 5 sheets in PDB entry 6VCK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
58 64anti-parallel
Strand 3
A
94 99parallel
Strand 4
A
102 108anti-parallel
Strand 5
A
114 117anti-parallel
Strand 6
A
259 262anti-parallel
Strand 7
A
245 250anti-parallel
Strand 8
A
237 242anti-parallel
Strand 9
A
201 207parallel
Strand 10
A
190 198anti-parallel
Strand 11
A
158 163parallel
Strand 12
A
146 154anti-parallel
Strand 13
A
139 143anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
58 64anti-parallel
Strand 3
A
44 49anti-parallel
Strand 4
A
11 17parallel
Strand 5
A
3 8anti-parallel
Strand 6
A
265 270anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
7 16anti-parallel
Strand 3
B
94 104parallel
Strand 4
B
65 70anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
7 16anti-parallel
Strand 3
B
94 104parallel
Strand 4
B
75 78anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
22 27anti-parallel
Strand 3
B
121 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il