Analysis of interatomic Contacts of Structural Units in PDB entry:
6VCS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VCS entry

There are 6 chains in PDB entry 6VCS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 414LEU 612
B
 PRO 414ALA 616
C
 G 1 C 12
D
 G 1 C 12
E
 ASN 416GLU 613
G
 UNK 0UNK 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6VCS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
432 439Right-handed alpha
Helix 2
AA2
A
502 512Right-handed alpha
Helix 3
AA3
A
526 530Right-handed 310
Helix 4
AA4
A
540 544Right-handed 310
Helix 5
AA5
A
591 601Right-handed alpha
Helix 6
AA6
B
432 439Right-handed alpha
Helix 7
AA7
B
502 512Right-handed alpha
Helix 8
AA8
B
526 530Right-handed 310
Helix 9
AA9
B
540 545Right-handed 310
Helix 10
AB1
B
591 601Right-handed alpha
Helix 11
AB2
B
610 615Right-handed alpha
Helix 12
AB3
E
432 439Right-handed alpha
Helix 13
AB4
E
502 511Right-handed alpha
Helix 14
AB5
E
526 530Right-handed 310
Helix 15
AB6
E
540 543Right-handed 310
Helix 16
AB7
E
591 602Right-handed alpha
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There are 6 sheets in PDB entry 6VCS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
553 568anti-parallel
Strand 3
A
574 582anti-parallel
Strand 4
A
475 479anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 452first strand
Strand 2
A
456 462anti-parallel
Strand 3
A
533 538parallel
Strand 4
A
553 568anti-parallel
Strand 5
A
522 523anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 430first strand
Strand 2
B
553 568anti-parallel
Strand 3
B
574 582anti-parallel
Strand 4
B
475 479anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 452first strand
Strand 2
B
456 462anti-parallel
Strand 3
B
533 538parallel
Strand 4
B
553 568anti-parallel
Strand 5
B
522 523anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
449 452first strand
Strand 2
E
456 462anti-parallel
Strand 3
E
533 538parallel
Strand 4
E
553 568anti-parallel
Strand 5
E
522 523anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
475 479first strand
Strand 2
E
574 582anti-parallel
Strand 3
E
553 568anti-parallel
Strand 4
E
429 430anti-parallel
Strand 5
E
605 606parallel
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