Analysis of interatomic Contacts of Structural Units in PDB entry:
6VD0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VD0 entry

There are 4 chains in PDB entry 6VD0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 392
B	MET 1	ASP 389
C	MET 1	ASP 389
D	MET 1	ILE 118

There are 56 helices in PDB entry 6VD0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	35	Right-handed alpha
Helix 2	AA2	A	64	77	Right-handed alpha
Helix 3	AA3	A	81	84	Right-handed 310
Helix 4	AA4	A	100	109	Right-handed alpha
Helix 5	AA5	A	114	118	Right-handed 310
Helix 6	AA6	A	139	158	Right-handed alpha
Helix 7	AA7	A	202	214	Right-handed alpha
Helix 8	AA8	A	220	224	Right-handed 310
Helix 9	AA9	A	241	246	Right-handed alpha
Helix 10	AB1	A	277	296	Right-handed alpha
Helix 11	AB2	A	329	341	Right-handed alpha
Helix 12	AB3	A	344	352	Right-handed alpha
Helix 13	AB4	A	362	367	Right-handed 310
Helix 14	AB5	A	378	382	Right-handed 310
Helix 15	AB6	B	15	35	Right-handed alpha
Helix 16	AB7	B	64	77	Right-handed alpha
Helix 17	AB8	B	81	84	Right-handed 310
Helix 18	AB9	B	100	109	Right-handed alpha
Helix 19	AC1	B	114	118	Right-handed 310
Helix 20	AC2	B	139	158	Right-handed alpha
Helix 21	AC3	B	202	214	Right-handed alpha
Helix 22	AC4	B	220	224	Right-handed 310
Helix 23	AC5	B	241	246	Right-handed alpha
Helix 24	AC6	B	277	296	Right-handed alpha
Helix 25	AC7	B	329	341	Right-handed alpha
Helix 26	AC8	B	344	352	Right-handed alpha
Helix 27	AC9	B	362	367	Right-handed 310
Helix 28	AD1	B	378	382	Right-handed 310
Helix 29	AD2	C	15	35	Right-handed alpha
Helix 30	AD3	C	64	77	Right-handed alpha
Helix 31	AD4	C	81	84	Right-handed 310
Helix 32	AD5	C	100	109	Right-handed alpha
Helix 33	AD6	C	114	118	Right-handed 310
Helix 34	AD7	C	139	158	Right-handed alpha
Helix 35	AD8	C	202	214	Right-handed alpha
Helix 36	AD9	C	220	224	Right-handed 310
Helix 37	AE1	C	241	246	Right-handed alpha
Helix 38	AE2	C	277	296	Right-handed alpha
Helix 39	AE3	C	329	341	Right-handed alpha
Helix 40	AE4	C	344	352	Right-handed alpha
Helix 41	AE5	C	362	367	Right-handed 310
Helix 42	AE6	C	378	382	Right-handed 310
Helix 43	AE7	D	15	35	Right-handed alpha
Helix 44	AE8	D	64	77	Right-handed alpha
Helix 45	AE9	D	81	84	Right-handed 310
Helix 46	AF1	D	100	109	Right-handed alpha
Helix 47	AF2	D	114	118	Right-handed 310
Helix 48	AF3	D	139	158	Right-handed alpha
Helix 49	AF4	D	202	214	Right-handed alpha
Helix 50	AF5	D	220	224	Right-handed 310
Helix 51	AF6	D	241	246	Right-handed alpha
Helix 52	AF7	D	277	296	Right-handed alpha
Helix 53	AF8	D	329	341	Right-handed alpha
Helix 54	AF9	D	344	352	Right-handed alpha
Helix 55	AG1	D	362	367	Right-handed 310
Helix 56	AG2	D	378	382	Right-handed 310

There are 16 sheets in PDB entry 6VD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	11	first strand
Strand 2	A	164	179	anti-parallel
Strand 3	A	182	197	anti-parallel
Strand 4	A	229	232	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	97	first strand
Strand 2	A	50	58	parallel
Strand 3	A	39	47	anti-parallel
Strand 4	A	248	249	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	85	86	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	131	first strand
Strand 2	A	301	308	anti-parallel
Strand 3	A	317	321	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	11	first strand
Strand 2	B	164	179	anti-parallel
Strand 3	B	182	197	anti-parallel
Strand 4	B	229	232	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	97	first strand
Strand 2	B	50	58	parallel
Strand 3	B	39	47	anti-parallel
Strand 4	B	248	249	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	85	86	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	131	first strand
Strand 2	B	301	308	anti-parallel
Strand 3	B	317	321	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	11	first strand
Strand 2	C	164	179	anti-parallel
Strand 3	C	182	197	anti-parallel
Strand 4	C	229	232	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	97	first strand
Strand 2	C	50	58	parallel
Strand 3	C	39	47	anti-parallel
Strand 4	C	248	249	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	80	first strand
Strand 2	C	85	86	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	131	first strand
Strand 2	C	301	308	anti-parallel
Strand 3	C	317	321	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	11	first strand
Strand 2	D	164	179	anti-parallel
Strand 3	D	182	197	anti-parallel
Strand 4	D	229	232	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	97	first strand
Strand 2	D	50	58	parallel
Strand 3	D	39	47	anti-parallel
Strand 4	D	248	249	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	80	first strand
Strand 2	D	85	86	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	131	first strand
Strand 2	D	301	308	anti-parallel
Strand 3	D	317	321	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VD0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VD0