Analysis of interatomic Contacts of Structural Units in PDB entry:
6VD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VD2 entry

There are 2 chains in PDB entry 6VD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 394
B
 ALA 0PRO 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6VD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 35Right-handed alpha
Helix 2
AA2
A
64 77Right-handed alpha
Helix 3
AA3
A
81 84Right-handed 310
Helix 4
AA4
A
100 109Right-handed alpha
Helix 5
AA5
A
114 118Right-handed 310
Helix 6
AA6
A
139 158Right-handed alpha
Helix 7
AA7
A
202 214Right-handed alpha
Helix 8
AA8
A
220 224Right-handed 310
Helix 9
AA9
A
241 246Right-handed alpha
Helix 10
AB1
A
277 296Right-handed alpha
Helix 11
AB2
A
329 341Right-handed alpha
Helix 12
AB3
A
344 352Right-handed alpha
Helix 13
AB4
A
362 367Right-handed 310
Helix 14
AB5
A
378 382Right-handed 310
Helix 15
AB6
B
15 35Right-handed alpha
Helix 16
AB7
B
64 77Right-handed alpha
Helix 17
AB8
B
81 84Right-handed 310
Helix 18
AB9
B
100 109Right-handed alpha
Helix 19
AC1
B
114 118Right-handed 310
Helix 20
AC2
B
139 158Right-handed alpha
Helix 21
AC3
B
202 214Right-handed alpha
Helix 22
AC4
B
220 224Right-handed 310
Helix 23
AC5
B
241 246Right-handed 310
Helix 24
AC6
B
277 296Right-handed alpha
Helix 25
AC7
B
329 341Right-handed alpha
Helix 26
AC8
B
344 352Right-handed alpha
Helix 27
AC9
B
362 366Right-handed 310
Helix 28
AD1
B
378 382Right-handed 310
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There are 8 sheets in PDB entry 6VD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
164 179anti-parallel
Strand 3
A
182 197anti-parallel
Strand 4
A
229 232parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 97first strand
Strand 2
A
50 58parallel
Strand 3
A
39 47anti-parallel
Strand 4
A
248 249anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
85 86anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 131first strand
Strand 2
A
301 308anti-parallel
Strand 3
A
317 321anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 11first strand
Strand 2
B
164 179anti-parallel
Strand 3
B
182 197anti-parallel
Strand 4
B
229 232parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 97first strand
Strand 2
B
50 58parallel
Strand 3
B
39 47anti-parallel
Strand 4
B
248 249anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
85 86anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 131first strand
Strand 2
B
301 308anti-parallel
Strand 3
B
317 321anti-parallel
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