Analysis of interatomic Contacts of Structural Units in PDB entry:
6VD7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VD7 entry

There are 7 chains in PDB entry 6VD7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 11	LYS 357
B	VAL 11	LYS 357
C	VAL 11	LYS 357
D	VAL 11	LYS 357
E	VAL 11	LYS 357
F	VAL 11	LYS 357
G	VAL 11	LYS 357

There are 91 helices in PDB entry 6VD7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	61	Right-handed alpha
Helix 2	AA2	A	73	84	Right-handed alpha
Helix 3	AA3	A	103	108	Right-handed alpha
Helix 4	AA4	A	108	131	Right-handed alpha
Helix 5	AA5	A	131	154	Right-handed alpha
Helix 6	AA6	A	196	205	Right-handed alpha
Helix 7	AA7	A	209	241	Right-handed alpha
Helix 8	AA8	A	271	298	Right-handed alpha
Helix 9	AA9	A	299	302	Right-handed 310
Helix 10	AB1	A	306	311	Right-handed alpha
Helix 11	AB2	A	312	314	Right-handed 310
Helix 12	AB3	A	328	341	Right-handed alpha
Helix 13	AB4	A	345	357	Right-handed alpha
Helix 14	AB5	B	33	61	Right-handed alpha
Helix 15	AB6	B	73	84	Right-handed alpha
Helix 16	AB7	B	103	108	Right-handed alpha
Helix 17	AB8	B	108	131	Right-handed alpha
Helix 18	AB9	B	131	154	Right-handed alpha
Helix 19	AC1	B	196	205	Right-handed alpha
Helix 20	AC2	B	209	241	Right-handed alpha
Helix 21	AC3	B	271	298	Right-handed alpha
Helix 22	AC4	B	299	302	Right-handed 310
Helix 23	AC5	B	306	311	Right-handed alpha
Helix 24	AC6	B	312	314	Right-handed 310
Helix 25	AC7	B	328	341	Right-handed alpha
Helix 26	AC8	B	345	357	Right-handed alpha
Helix 27	AC9	C	33	61	Right-handed alpha
Helix 28	AD1	C	73	84	Right-handed alpha
Helix 29	AD2	C	103	108	Right-handed alpha
Helix 30	AD3	C	108	131	Right-handed alpha
Helix 31	AD4	C	131	154	Right-handed alpha
Helix 32	AD5	C	196	205	Right-handed alpha
Helix 33	AD6	C	209	241	Right-handed alpha
Helix 34	AD7	C	271	298	Right-handed alpha
Helix 35	AD8	C	299	302	Right-handed 310
Helix 36	AD9	C	306	311	Right-handed alpha
Helix 37	AE1	C	312	314	Right-handed 310
Helix 38	AE2	C	328	341	Right-handed alpha
Helix 39	AE3	C	345	357	Right-handed alpha
Helix 40	AE4	D	33	61	Right-handed alpha
Helix 41	AE5	D	73	84	Right-handed alpha
Helix 42	AE6	D	103	108	Right-handed alpha
Helix 43	AE7	D	108	131	Right-handed alpha
Helix 44	AE8	D	131	154	Right-handed alpha
Helix 45	AE9	D	196	205	Right-handed alpha
Helix 46	AF1	D	209	241	Right-handed alpha
Helix 47	AF2	D	271	298	Right-handed alpha
Helix 48	AF3	D	299	302	Right-handed 310
Helix 49	AF4	D	306	311	Right-handed alpha
Helix 50	AF5	D	312	314	Right-handed 310
Helix 51	AF6	D	328	341	Right-handed alpha
Helix 52	AF7	D	345	357	Right-handed alpha
Helix 53	AF8	E	33	61	Right-handed alpha
Helix 54	AF9	E	73	84	Right-handed alpha
Helix 55	AG1	E	103	108	Right-handed alpha
Helix 56	AG2	E	108	131	Right-handed alpha
Helix 57	AG3	E	131	154	Right-handed alpha
Helix 58	AG4	E	196	205	Right-handed alpha
Helix 59	AG5	E	209	241	Right-handed alpha
Helix 60	AG6	E	271	298	Right-handed alpha
Helix 61	AG7	E	299	302	Right-handed 310
Helix 62	AG8	E	306	311	Right-handed alpha
Helix 63	AG9	E	312	314	Right-handed 310
Helix 64	AH1	E	328	341	Right-handed alpha
Helix 65	AH2	E	345	357	Right-handed alpha
Helix 66	AH3	F	33	61	Right-handed alpha
Helix 67	AH4	F	73	84	Right-handed alpha
Helix 68	AH5	F	103	108	Right-handed alpha
Helix 69	AH6	F	108	131	Right-handed alpha
Helix 70	AH7	F	131	154	Right-handed alpha
Helix 71	AH8	F	196	205	Right-handed alpha
Helix 72	AH9	F	209	241	Right-handed alpha
Helix 73	AI1	F	271	298	Right-handed alpha
Helix 74	AI2	F	299	302	Right-handed 310
Helix 75	AI3	F	306	311	Right-handed alpha
Helix 76	AI4	F	312	314	Right-handed 310
Helix 77	AI5	F	328	341	Right-handed alpha
Helix 78	AI6	F	345	357	Right-handed alpha
Helix 79	AI7	G	33	61	Right-handed alpha
Helix 80	AI8	G	73	84	Right-handed alpha
Helix 81	AI9	G	103	108	Right-handed alpha
Helix 82	AJ1	G	108	131	Right-handed alpha
Helix 83	AJ2	G	131	154	Right-handed alpha
Helix 84	AJ3	G	196	205	Right-handed alpha
Helix 85	AJ4	G	209	241	Right-handed alpha
Helix 86	AJ5	G	271	298	Right-handed alpha
Helix 87	AJ6	G	299	302	Right-handed 310
Helix 88	AJ7	G	306	311	Right-handed alpha
Helix 89	AJ8	G	312	314	Right-handed 310
Helix 90	AJ9	G	328	341	Right-handed alpha
Helix 91	AK1	G	345	357	Right-handed alpha

There are 7 sheets in PDB entry 6VD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	265	269	anti-parallel
Strand 3	A	245	248	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	265	269	anti-parallel
Strand 3	B	245	248	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	265	269	anti-parallel
Strand 3	C	245	248	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	66	first strand
Strand 2	D	265	269	anti-parallel
Strand 3	D	245	248	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	66	first strand
Strand 2	E	265	269	anti-parallel
Strand 3	E	245	248	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	265	269	anti-parallel
Strand 3	F	245	248	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	66	first strand
Strand 2	G	265	269	anti-parallel
Strand 3	G	245	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VD7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VD7