Analysis of interatomic Contacts of Structural Units in PDB entry:
6VD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VD9 entry

There are 4 chains in PDB entry 6VD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 215LEU 287
B
 VAL 215LEU 287
C
 VAL 215LEU 287
D
 VAL 215LEU 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6VD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
216 226Right-handed alpha
Helix 2
AA2
A
259 264Right-handed alpha
Helix 3
AA3
A
264 277Right-handed alpha
Helix 4
AA4
B
216 227Right-handed alpha
Helix 5
AA5
B
259 264Right-handed alpha
Helix 6
AA6
B
264 277Right-handed alpha
Helix 7
AA7
C
216 226Right-handed alpha
Helix 8
AA8
C
259 264Right-handed alpha
Helix 9
AA9
C
264 277Right-handed alpha
Helix 10
AB1
D
216 227Right-handed alpha
Helix 11
AB2
D
259 264Right-handed alpha
Helix 12
AB3
D
264 277Right-handed alpha
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There are 4 sheets in PDB entry 6VD9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 240first strand
Strand 2
A
246 254anti-parallel
Strand 3
A
280 286parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 240first strand
Strand 2
B
246 254anti-parallel
Strand 3
B
280 286parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
230 239first strand
Strand 2
C
247 254anti-parallel
Strand 3
C
280 286parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
230 237first strand
Strand 2
D
247 254anti-parallel
Strand 3
D
280 286parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il