Analysis of interatomic Contacts of Structural Units in PDB entry:
6VDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VDC entry

There is 1 chain in PDB entry 6VDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 322HIS 908
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6VDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
329 338Right-handed alpha
Helix 2
AA2
A
379 392Right-handed alpha
Helix 3
AA3
A
401 411Right-handed alpha
Helix 4
AA4
A
423 431Right-handed alpha
Helix 5
AA5
A
438 448Right-handed alpha
Helix 6
AA6
A
471 498Right-handed alpha
Helix 7
AA7
A
501 508Right-handed alpha
Helix 8
AA8
A
508 523Right-handed alpha
Helix 9
AA9
A
527 540Right-handed alpha
Helix 10
AB1
A
603 627Right-handed alpha
Helix 11
AB2
A
661 670Right-handed alpha
Helix 12
AB3
A
687 698Right-handed alpha
Helix 13
AB4
A
699 709Right-handed alpha
Helix 14
AB5
A
711 722Right-handed alpha
Helix 15
AB6
A
731 739Right-handed alpha
Helix 16
AB7
A
764 772Right-handed alpha
Helix 17
AB8
A
774 792Right-handed alpha
Helix 18
AB9
A
805 809Right-handed 310
Helix 19
AC1
A
811 849Right-handed alpha
Helix 20
AC2
A
871 885Right-handed alpha
Helix 21
AC3
A
902 908Right-handed alpha
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There are 5 sheets in PDB entry 6VDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
370 374parallel
Strand 3
A
358 364anti-parallel
Strand 4
A
343 349anti-parallel
Strand 5
A
397 399parallel
Strand 6
A
419 422parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 525first strand
Strand 2
A
632 633anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 638first strand
Strand 2
A
648 650anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 859first strand
Strand 2
A
862 867anti-parallel
Strand 3
A
679 685anti-parallel
Strand 4
A
895 900anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 795first strand
Strand 2
A
801 803anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il