Analysis of interatomic Contacts of Structural Units in PDB entry:
6VDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VDE entry

There are 2 chains in PDB entry 6VDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 18HIS 908
B
 ASP 18VAL 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 81 helices in PDB entry 6VDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 36Right-handed alpha
Helix 2
AA2
A
51 68Right-handed alpha
Helix 3
AA3
A
100 104Right-handed 310
Helix 4
AA4
A
105 117Right-handed alpha
Helix 5
AA5
A
128 143Right-handed alpha
Helix 6
AA6
A
180 189Right-handed alpha
Helix 7
AA7
A
191 193Right-handed 310
Helix 8
AA8
A
194 199Right-handed alpha
Helix 9
AA9
A
200 202Right-handed 310
Helix 10
AB1
A
219 225Right-handed 310
Helix 11
AB2
A
237 241Right-handed 310
Helix 12
AB3
A
286 294Right-handed alpha
Helix 13
AB4
A
296 307Right-handed alpha
Helix 14
AB5
A
329 337Right-handed alpha
Helix 15
AB6
A
379 392Right-handed alpha
Helix 16
AB7
A
401 411Right-handed alpha
Helix 17
AB8
A
423 431Right-handed alpha
Helix 18
AB9
A
438 447Right-handed alpha
Helix 19
AC1
A
457 462Right-handed 310
Helix 20
AC2
A
471 499Right-handed alpha
Helix 21
AC3
A
501 508Right-handed alpha
Helix 22
AC4
A
508 523Right-handed alpha
Helix 23
AC5
A
527 552Right-handed alpha
Helix 24
AC6
A
561 570Right-handed alpha
Helix 25
AC7
A
588 600Right-handed alpha
Helix 26
AC8
A
601 626Right-handed alpha
Helix 27
AC9
A
653 657Right-handed 310
Helix 28
AD1
A
663 668Right-handed alpha
Helix 29
AD2
A
669 671Right-handed 310
Helix 30
AD3
A
687 698Right-handed alpha
Helix 31
AD4
A
699 708Right-handed alpha
Helix 32
AD5
A
711 719Right-handed alpha
Helix 33
AD6
A
731 743Right-handed alpha
Helix 34
AD7
A
748 756Right-handed alpha
Helix 35
AD8
A
759 772Right-handed alpha
Helix 36
AD9
A
776 790Right-handed alpha
Helix 37
AE1
A
815 823Right-handed alpha
Helix 38
AE2
A
827 850Right-handed alpha
Helix 39
AE3
A
871 885Right-handed alpha
Helix 40
AE4
A
902 908Right-handed alpha
Helix 41
AE5
B
27 36Right-handed alpha
Helix 42
AE6
B
51 68Right-handed alpha
Helix 43
AE7
B
100 104Right-handed 310
Helix 44
AE8
B
105 117Right-handed alpha
Helix 45
AE9
B
128 143Right-handed alpha
Helix 46
AF1
B
180 187Right-handed alpha
Helix 47
AF2
B
191 193Right-handed 310
Helix 48
AF3
B
194 199Right-handed alpha
Helix 49
AF4
B
200 202Right-handed 310
Helix 50
AF5
B
219 228Right-handed alpha
Helix 51
AF6
B
229 234Right-handed alpha
Helix 52
AF7
B
283 291Right-handed alpha
Helix 53
AF8
B
296 307Right-handed alpha
Helix 54
AF9
B
329 337Right-handed alpha
Helix 55
AG1
B
379 392Right-handed alpha
Helix 56
AG2
B
401 411Right-handed alpha
Helix 57
AG3
B
423 431Right-handed alpha
Helix 58
AG4
B
438 447Right-handed alpha
Helix 59
AG5
B
455 464Right-handed alpha
Helix 60
AG6
B
471 499Right-handed alpha
Helix 61
AG7
B
501 508Right-handed alpha
Helix 62
AG8
B
508 523Right-handed alpha
Helix 63
AG9
B
527 552Right-handed alpha
Helix 64
AH1
B
561 570Right-handed alpha
Helix 65
AH2
B
588 600Right-handed alpha
Helix 66
AH3
B
601 625Right-handed alpha
Helix 67
AH4
B
653 657Right-handed 310
Helix 68
AH5
B
663 668Right-handed alpha
Helix 69
AH6
B
669 671Right-handed 310
Helix 70
AH7
B
687 696Right-handed alpha
Helix 71
AH8
B
699 708Right-handed alpha
Helix 72
AH9
B
711 719Right-handed alpha
Helix 73
AI1
B
731 743Right-handed alpha
Helix 74
AI2
B
750 756Right-handed alpha
Helix 75
AI3
B
761 764Right-handed 310
Helix 76
AI4
B
765 773Right-handed alpha
Helix 77
AI5
B
775 792Right-handed alpha
Helix 78
AI6
B
814 823Right-handed alpha
Helix 79
AI7
B
827 850Right-handed alpha
Helix 80
AI8
B
871 885Right-handed alpha
Helix 81
AI9
B
902 908Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 6VDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
72 76parallel
Strand 3
A
21 26parallel
Strand 4
A
146 150parallel
Strand 5
A
164 167parallel
Strand 6
A
178 179anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 324first strand
Strand 2
A
369 374parallel
Strand 3
A
358 364anti-parallel
Strand 4
A
343 349anti-parallel
Strand 5
A
397 399parallel
Strand 6
A
419 422parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 525first strand
Strand 2
A
632 633anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 638first strand
Strand 2
A
648 650anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 857first strand
Strand 2
A
862 867anti-parallel
Strand 3
A
679 685anti-parallel
Strand 4
A
895 900anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 794first strand
Strand 2
A
802 803anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
72 76parallel
Strand 3
B
21 26parallel
Strand 4
B
146 150parallel
Strand 5
B
164 167parallel
Strand 6
B
178 179anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 324first strand
Strand 2
B
370 374parallel
Strand 3
B
358 364anti-parallel
Strand 4
B
343 349anti-parallel
Strand 5
B
397 399parallel
Strand 6
B
419 422parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
524 525first strand
Strand 2
B
632 633anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
636 638first strand
Strand 2
B
648 650anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
854 857first strand
Strand 2
B
862 867anti-parallel
Strand 3
B
679 685anti-parallel
Strand 4
B
895 900anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
793 794first strand
Strand 2
B
802 803anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il