Analysis of interatomic Contacts of Structural Units in PDB entry:
6VE1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VE1 entry

There are 4 chains in PDB entry 6VE1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 9	PRO 275
B	MET 8	THR 274
C	TYR 7	THR 274
D	MET 8	THR 274

There are 49 helices in PDB entry 6VE1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed 310
Helix 2	AA2	A	66	75	Right-handed alpha
Helix 3	AA3	A	75	80	Right-handed alpha
Helix 4	AA4	A	80	86	Right-handed alpha
Helix 5	AA5	A	108	126	Right-handed alpha
Helix 6	AA6	A	141	145	Right-handed 310
Helix 7	AA7	A	151	164	Right-handed alpha
Helix 8	AA8	A	174	179	Right-handed alpha
Helix 9	AA9	A	189	192	Right-handed 310
Helix 10	AB1	A	211	213	Right-handed 310
Helix 11	AB2	A	226	240	Right-handed alpha
Helix 12	AB3	A	255	268	Right-handed alpha
Helix 13	AB4	B	25	30	Right-handed 310
Helix 14	AB5	B	66	75	Right-handed alpha
Helix 15	AB6	B	75	80	Right-handed alpha
Helix 16	AB7	B	80	86	Right-handed alpha
Helix 17	AB8	B	108	126	Right-handed alpha
Helix 18	AB9	B	141	145	Right-handed 310
Helix 19	AC1	B	151	164	Right-handed alpha
Helix 20	AC2	B	174	179	Right-handed alpha
Helix 21	AC3	B	189	192	Right-handed 310
Helix 22	AC4	B	211	213	Right-handed 310
Helix 23	AC5	B	226	240	Right-handed alpha
Helix 24	AC6	B	255	268	Right-handed alpha
Helix 25	AC7	C	25	30	Right-handed 310
Helix 26	AC8	C	66	75	Right-handed alpha
Helix 27	AC9	C	75	80	Right-handed alpha
Helix 28	AD1	C	80	86	Right-handed alpha
Helix 29	AD2	C	108	127	Right-handed alpha
Helix 30	AD3	C	141	145	Right-handed 310
Helix 31	AD4	C	151	164	Right-handed alpha
Helix 32	AD5	C	175	180	Right-handed 310
Helix 33	AD6	C	189	192	Right-handed 310
Helix 34	AD7	C	211	213	Right-handed 310
Helix 35	AD8	C	226	241	Right-handed alpha
Helix 36	AD9	C	255	268	Right-handed alpha
Helix 37	AE1	D	25	32	Right-handed 310
Helix 38	AE2	D	66	75	Right-handed alpha
Helix 39	AE3	D	75	80	Right-handed alpha
Helix 40	AE4	D	80	86	Right-handed alpha
Helix 41	AE5	D	108	127	Right-handed alpha
Helix 42	AE6	D	141	145	Right-handed 310
Helix 43	AE7	D	151	164	Right-handed alpha
Helix 44	AE8	D	175	180	Right-handed 310
Helix 45	AE9	D	189	192	Right-handed 310
Helix 46	AF1	D	211	213	Right-handed 310
Helix 47	AF2	D	226	239	Right-handed alpha
Helix 48	AF3	D	240	242	Right-handed 310
Helix 49	AF4	D	255	268	Right-handed alpha

There are 16 sheets in PDB entry 6VE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	44	55	anti-parallel
Strand 3	A	14	20	parallel
Strand 4	A	244	248	parallel
Strand 5	A	218	221	parallel
Strand 6	A	202	203	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	44	55	anti-parallel
Strand 3	A	89	95	parallel
Strand 4	A	130	134	parallel
Strand 5	A	168	172	parallel
Strand 6	A	194	196	parallel
Strand 7	A	215	216	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	271	273	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	64	first strand
Strand 2	B	44	55	anti-parallel
Strand 3	B	14	20	parallel
Strand 4	B	244	248	parallel
Strand 5	B	218	221	parallel
Strand 6	B	202	203	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	64	first strand
Strand 2	B	44	55	anti-parallel
Strand 3	B	89	95	parallel
Strand 4	B	130	134	parallel
Strand 5	B	168	172	parallel
Strand 6	B	194	196	parallel
Strand 7	B	215	216	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	271	273	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	64	first strand
Strand 2	C	44	55	anti-parallel
Strand 3	C	14	20	parallel
Strand 4	C	244	248	parallel
Strand 5	C	218	221	parallel
Strand 6	C	202	203	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	64	first strand
Strand 2	C	44	55	anti-parallel
Strand 3	C	89	95	parallel
Strand 4	C	130	134	parallel
Strand 5	C	168	172	parallel
Strand 6	C	194	196	parallel
Strand 7	C	215	216	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	271	273	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	183	first strand
Strand 2	C	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	44	53	anti-parallel
Strand 3	D	89	95	parallel
Strand 4	D	130	134	parallel
Strand 5	D	168	172	parallel
Strand 6	D	194	196	parallel
Strand 7	D	215	216	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	44	53	anti-parallel
Strand 3	D	14	20	parallel
Strand 4	D	244	248	parallel
Strand 5	D	219	221	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	271	272	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	183	first strand
Strand 2	D	186	187	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VE1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VE1