Analysis of interatomic Contacts of Structural Units in PDB entry:
6VEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VEF entry

There are 2 chains in PDB entry 6VEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 84GLU 933
B
 ASP 84GLU 933
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6VEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 102Right-handed alpha
Helix 2
AA2
A
152 162Right-handed alpha
Helix 3
AA3
A
177 189Right-handed alpha
Helix 4
AA4
A
196 221Right-handed alpha
Helix 5
AA5
A
234 249Right-handed alpha
Helix 6
AA6
A
262 270Right-handed alpha
Helix 7
AA7
A
274 284Right-handed alpha
Helix 8
AA8
A
325 340Right-handed alpha
Helix 9
AA9
A
364 373Right-handed alpha
Helix 10
AB1
A
410 414Right-handed 310
Helix 11
AB2
A
426 445Right-handed alpha
Helix 12
AB3
A
482 494Right-handed alpha
Helix 13
AB4
A
498 516Right-handed alpha
Helix 14
AB5
A
550 563Right-handed alpha
Helix 15
AB6
A
571 586Right-handed alpha
Helix 16
AB7
A
592 608Right-handed alpha
Helix 17
AB8
A
664 673Right-handed alpha
Helix 18
AB9
A
687 692Right-handed 310
Helix 19
AC1
A
694 700Right-handed alpha
Helix 20
AC2
A
703 708Right-handed alpha
Helix 21
AC3
A
734 738Right-handed 310
Helix 22
AC4
A
753 766Right-handed alpha
Helix 23
AC5
A
779 784Right-handed 310
Helix 24
AC6
A
791 796Right-handed alpha
Helix 25
AC7
A
823 833Right-handed alpha
Helix 26
AC8
A
852 859Right-handed alpha
Helix 27
AC9
A
884 893Right-handed alpha
Helix 28
AD1
A
914 930Right-handed alpha
Helix 29
AD2
B
85 102Right-handed alpha
Helix 30
AD3
B
152 162Right-handed alpha
Helix 31
AD4
B
177 189Right-handed alpha
Helix 32
AD5
B
196 221Right-handed alpha
Helix 33
AD6
B
234 249Right-handed alpha
Helix 34
AD7
B
262 270Right-handed alpha
Helix 35
AD8
B
274 284Right-handed alpha
Helix 36
AD9
B
325 340Right-handed alpha
Helix 37
AE1
B
364 373Right-handed alpha
Helix 38
AE2
B
410 414Right-handed 310
Helix 39
AE3
B
426 445Right-handed alpha
Helix 40
AE4
B
482 494Right-handed alpha
Helix 41
AE5
B
498 516Right-handed alpha
Helix 42
AE6
B
550 563Right-handed alpha
Helix 43
AE7
B
571 586Right-handed alpha
Helix 44
AE8
B
592 608Right-handed alpha
Helix 45
AE9
B
664 673Right-handed alpha
Helix 46
AF1
B
687 692Right-handed 310
Helix 47
AF2
B
694 700Right-handed alpha
Helix 48
AF3
B
703 708Right-handed alpha
Helix 49
AF4
B
734 738Right-handed 310
Helix 50
AF5
B
753 766Right-handed alpha
Helix 51
AF6
B
779 784Right-handed 310
Helix 52
AF7
B
791 796Right-handed alpha
Helix 53
AF8
B
823 833Right-handed alpha
Helix 54
AF9
B
852 859Right-handed alpha
Helix 55
AG1
B
884 893Right-handed alpha
Helix 56
AG2
B
914 930Right-handed alpha
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There are 8 sheets in PDB entry 6VEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
419 422anti-parallel
Strand 3
A
448 453parallel
Strand 4
A
384 389parallel
Strand 5
A
349 355parallel
Strand 6
A
253 258parallel
Strand 7
A
311 316parallel
Strand 8
A
302 306anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 613first strand
Strand 2
A
679 683parallel
Strand 3
A
715 718parallel
Strand 4
A
773 776parallel
Strand 5
A
747 749parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 631first strand
Strand 2
A
638 639anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
840 843first strand
Strand 2
A
816 819parallel
Strand 3
A
868 871parallel
Strand 4
A
898 901parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
419 422anti-parallel
Strand 3
B
448 453parallel
Strand 4
B
384 389parallel
Strand 5
B
349 355parallel
Strand 6
B
253 258parallel
Strand 7
B
311 316parallel
Strand 8
B
302 306anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
611 613first strand
Strand 2
B
679 683parallel
Strand 3
B
715 718parallel
Strand 4
B
773 776parallel
Strand 5
B
747 749parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
630 631first strand
Strand 2
B
638 639anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
840 843first strand
Strand 2
B
816 819parallel
Strand 3
B
868 871parallel
Strand 4
B
898 901parallel
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