Analysis of interatomic Contacts of Structural Units in PDB entry:
6VEI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VEI entry

There are 2 chains in PDB entry 6VEI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3SER 415
B
 LYS 3HIS 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 6VEI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
45 52Right-handed alpha
Helix 3
AA3
A
54 68Right-handed alpha
Helix 4
AA4
A
79 87Right-handed alpha
Helix 5
AA5
A
94 104Right-handed alpha
Helix 6
AA6
A
136 141Right-handed 310
Helix 7
AA7
A
186 204Right-handed alpha
Helix 8
AA8
A
218 235Right-handed alpha
Helix 9
AA9
A
235 242Right-handed alpha
Helix 10
AB1
A
250 261Right-handed alpha
Helix 11
AB2
A
270 277Right-handed alpha
Helix 12
AB3
A
277 286Right-handed alpha
Helix 13
AB4
A
287 289Right-handed 310
Helix 14
AB5
A
312 321Right-handed alpha
Helix 15
AB6
A
329 348Right-handed alpha
Helix 16
AB7
A
349 369Right-handed alpha
Helix 17
AB8
A
373 382Right-handed alpha
Helix 18
AB9
A
383 386Right-handed 310
Helix 19
AC1
A
387 391Right-handed 310
Helix 20
AC2
A
393 413Right-handed alpha
Helix 21
AC3
B
16 31Right-handed alpha
Helix 22
AC4
B
45 52Right-handed alpha
Helix 23
AC5
B
54 68Right-handed alpha
Helix 24
AC6
B
79 87Right-handed alpha
Helix 25
AC7
B
94 104Right-handed alpha
Helix 26
AC8
B
136 141Right-handed 310
Helix 27
AC9
B
186 204Right-handed alpha
Helix 28
AD1
B
218 235Right-handed alpha
Helix 29
AD2
B
235 242Right-handed alpha
Helix 30
AD3
B
251 261Right-handed alpha
Helix 31
AD4
B
270 286Right-handed alpha
Helix 32
AD5
B
312 321Right-handed alpha
Helix 33
AD6
B
329 348Right-handed alpha
Helix 34
AD7
B
349 369Right-handed alpha
Helix 35
AD8
B
373 382Right-handed alpha
Helix 36
AD9
B
383 386Right-handed 310
Helix 37
AE1
B
387 391Right-handed 310
Helix 38
AE2
B
393 415Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6VEI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 43first strand
Strand 2
A
5 14parallel
Strand 3
A
69 72parallel
Strand 4
A
303 307parallel
Strand 5
A
291 296anti-parallel
Strand 6
A
106 111anti-parallel
Strand 7
A
128 132anti-parallel
Strand 8
A
265 269parallel
Strand 9
A
207 210parallel
Strand 10
A
246 249parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
177 185anti-parallel
Strand 3
B
177 185anti-parallel
Strand 4
B
142 146anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 172first strand
Strand 2
A
150 158anti-parallel
Strand 3
B
150 158anti-parallel
Strand 4
B
165 172anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 43first strand
Strand 2
B
5 14parallel
Strand 3
B
69 72parallel
Strand 4
B
303 307parallel
Strand 5
B
291 296anti-parallel
Strand 6
B
106 111anti-parallel
Strand 7
B
128 133anti-parallel
Strand 8
B
265 269parallel
Strand 9
B
207 211parallel
Strand 10
B
246 250parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il