Analysis of interatomic Contacts of Structural Units in PDB entry:
6VEJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VEJ entry

There are 6 chains in PDB entry 6VEJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 1022
B	MET 1	HIS 1022
C	MET 1	HIS 1022
P	CYS 1	ARG 695
Q	CYS 1	ARG 695
R	CYS 1	ARG 695

There are123 helices in PDB entry 6VEJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	14	Right-handed alpha
Helix 2	AA2	A	15	36	Right-handed alpha
Helix 3	AA3	A	60	78	Right-handed alpha
Helix 4	AA4	A	108	124	Right-handed alpha
Helix 5	AA5	A	125	127	Right-handed 310
Helix 6	AA6	A	156	172	Right-handed alpha
Helix 7	AA7	A	195	202	Right-handed alpha
Helix 8	AA8	A	205	218	Right-handed alpha
Helix 9	AA9	A	243	248	Right-handed alpha
Helix 10	AB1	A	259	263	Right-handed alpha
Helix 11	AB2	A	300	315	Right-handed alpha
Helix 12	AB3	A	327	359	Right-handed alpha
Helix 13	AB4	A	362	385	Right-handed alpha
Helix 14	AB5	A	389	421	Right-handed alpha
Helix 15	AB6	A	425	451	Right-handed alpha
Helix 16	AB7	A	452	455	Right-handed 310
Helix 17	AB8	A	460	494	Right-handed alpha
Helix 18	AB9	A	503	505	Right-handed 310
Helix 19	AC1	A	506	523	Right-handed alpha
Helix 20	AC2	A	523	542	Right-handed alpha
Helix 21	AC3	A	569	584	Right-handed alpha
Helix 22	AC4	A	613	616	Right-handed 310
Helix 23	AC5	A	632	644	Right-handed alpha
Helix 24	AC6	A	673	689	Right-handed alpha
Helix 25	AC7	A	714	721	Right-handed alpha
Helix 26	AC8	A	723	736	Right-handed alpha
Helix 27	AC9	A	758	761	Right-handed 310
Helix 28	AD1	A	764	768	Right-handed 310
Helix 29	AD2	A	783	785	Right-handed 310
Helix 30	AD3	A	799	803	Right-handed 310
Helix 31	AD4	A	817	835	Right-handed alpha
Helix 32	AD5	A	847	860	Right-handed alpha
Helix 33	AD6	A	861	877	Right-handed alpha
Helix 34	AD7	A	879	893	Right-handed alpha
Helix 35	AD8	A	893	900	Right-handed alpha
Helix 36	AD9	A	910	939	Right-handed alpha
Helix 37	AE1	A	943	968	Right-handed alpha
Helix 38	AE2	A	970	975	Right-handed alpha
Helix 39	AE3	A	980	1011	Right-handed alpha
Helix 40	AE4	B	7	14	Right-handed alpha
Helix 41	AE5	B	15	36	Right-handed alpha
Helix 42	AE6	B	60	78	Right-handed alpha
Helix 43	AE7	B	108	124	Right-handed alpha
Helix 44	AE8	B	125	127	Right-handed 310
Helix 45	AE9	B	156	172	Right-handed alpha
Helix 46	AF1	B	195	202	Right-handed alpha
Helix 47	AF2	B	205	218	Right-handed alpha
Helix 48	AF3	B	243	248	Right-handed alpha
Helix 49	AF4	B	259	263	Right-handed alpha
Helix 50	AF5	B	300	315	Right-handed alpha
Helix 51	AF6	B	327	359	Right-handed alpha
Helix 52	AF7	B	362	385	Right-handed alpha
Helix 53	AF8	B	389	421	Right-handed alpha
Helix 54	AF9	B	425	451	Right-handed alpha
Helix 55	AG1	B	452	455	Right-handed 310
Helix 56	AG2	B	460	494	Right-handed alpha
Helix 57	AG3	B	503	505	Right-handed 310
Helix 58	AG4	B	506	523	Right-handed alpha
Helix 59	AG5	B	523	542	Right-handed alpha
Helix 60	AG6	B	569	584	Right-handed alpha
Helix 61	AG7	B	613	616	Right-handed 310
Helix 62	AG8	B	632	644	Right-handed alpha
Helix 63	AG9	B	673	689	Right-handed alpha
Helix 64	AH1	B	714	721	Right-handed alpha
Helix 65	AH2	B	723	736	Right-handed alpha
Helix 66	AH3	B	758	761	Right-handed 310
Helix 67	AH4	B	764	768	Right-handed 310
Helix 68	AH5	B	783	785	Right-handed 310
Helix 69	AH6	B	799	803	Right-handed 310
Helix 70	AH7	B	817	835	Right-handed alpha
Helix 71	AH8	B	847	860	Right-handed alpha
Helix 72	AH9	B	861	877	Right-handed alpha
Helix 73	AI1	B	879	893	Right-handed alpha
Helix 74	AI2	B	893	900	Right-handed alpha
Helix 75	AI3	B	910	939	Right-handed alpha
Helix 76	AI4	B	943	968	Right-handed alpha
Helix 77	AI5	B	970	975	Right-handed alpha
Helix 78	AI6	B	980	1011	Right-handed alpha
Helix 79	AI7	C	7	14	Right-handed alpha
Helix 80	AI8	C	15	36	Right-handed alpha
Helix 81	AI9	C	60	78	Right-handed alpha
Helix 82	AJ1	C	108	124	Right-handed alpha
Helix 83	AJ2	C	125	127	Right-handed 310
Helix 84	AJ3	C	156	172	Right-handed alpha
Helix 85	AJ4	C	195	202	Right-handed alpha
Helix 86	AJ5	C	205	218	Right-handed alpha
Helix 87	AJ6	C	243	248	Right-handed alpha
Helix 88	AJ7	C	259	263	Right-handed alpha
Helix 89	AJ8	C	300	315	Right-handed alpha
Helix 90	AJ9	C	327	359	Right-handed alpha
Helix 91	AK1	C	362	385	Right-handed alpha
Helix 92	AK2	C	389	421	Right-handed alpha
Helix 93	AK3	C	425	451	Right-handed alpha
Helix 94	AK4	C	452	455	Right-handed 310
Helix 95	AK5	C	460	494	Right-handed alpha
Helix 96	AK6	C	503	505	Right-handed 310
Helix 97	AK7	C	506	523	Right-handed alpha
Helix 98	AK8	C	523	542	Right-handed alpha
Helix 99	AK9	C	569	584	Right-handed alpha
Helix 100	AL1	C	613	616	Right-handed 310
Helix 101	AL2	C	632	644	Right-handed alpha
Helix 102	AL3	C	673	689	Right-handed alpha
Helix 103	AL4	C	714	721	Right-handed alpha
Helix 104	AL5	C	723	736	Right-handed alpha
Helix 105	AL6	C	758	761	Right-handed 310
Helix 106	AL7	C	764	768	Right-handed 310
Helix 107	AL8	C	783	785	Right-handed 310
Helix 108	AL9	C	799	803	Right-handed 310
Helix 109	AM1	C	817	835	Right-handed alpha
Helix 110	AM2	C	847	860	Right-handed alpha
Helix 111	AM3	C	861	877	Right-handed alpha
Helix 112	AM4	C	879	893	Right-handed alpha
Helix 113	AM5	C	893	900	Right-handed alpha
Helix 114	AM6	C	910	939	Right-handed alpha
Helix 115	AM7	C	943	968	Right-handed alpha
Helix 116	AM8	C	970	975	Right-handed alpha
Helix 117	AM9	C	980	1011	Right-handed alpha
Helix 118	AN1	P	340	345	Right-handed alpha
Helix 119	AN2	P	669	673	Right-handed 310
Helix 120	AN3	Q	340	345	Right-handed alpha
Helix 121	AN4	Q	669	673	Right-handed 310
Helix 122	AN5	R	340	345	Right-handed alpha
Helix 123	AN6	R	669	673	Right-handed 310

There are 39 sheets in PDB entry 6VEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	89	first strand
Strand 2	A	93	100	anti-parallel
Strand 3	A	50	55	anti-parallel
Strand 4	A	133	136	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	182	first strand
Strand 2	A	287	290	anti-parallel
Strand 3	A	147	151	anti-parallel
Strand 4	A	321	325	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	266	first strand
Strand 2	A	188	194	anti-parallel
Strand 3	A	270	271	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	266	first strand
Strand 2	A	188	194	anti-parallel
Strand 3	A	750	756	parallel
Strand 4	A	739	743	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	224	first strand
Strand 2	A	233	237	anti-parallel
Strand 3	B	706	711	parallel
Strand 4	B	786	792	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	284	first strand
Strand 2	A	277	280	anti-parallel
Strand 3	A	591	597	anti-parallel
Strand 4	A	618	623	anti-parallel
Strand 5	A	557	563	anti-parallel
Strand 6	A	649	654	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	547	548	first strand
Strand 2	A	908	909	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	698	first strand
Strand 2	A	805	810	anti-parallel
Strand 3	A	666	670	anti-parallel
Strand 4	A	842	844	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	786	792	first strand
Strand 2	A	706	711	anti-parallel
Strand 3	C	233	236	parallel
Strand 4	C	222	224	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	771	773	first strand
Strand 2	A	779	781	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	89	first strand
Strand 2	B	93	100	anti-parallel
Strand 3	B	50	55	anti-parallel
Strand 4	B	133	136	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	182	first strand
Strand 2	B	287	290	anti-parallel
Strand 3	B	147	151	anti-parallel
Strand 4	B	321	325	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	266	first strand
Strand 2	B	188	194	anti-parallel
Strand 3	B	270	271	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	266	first strand
Strand 2	B	188	194	anti-parallel
Strand 3	B	750	756	parallel
Strand 4	B	739	743	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	224	first strand
Strand 2	B	233	236	anti-parallel
Strand 3	C	706	711	parallel
Strand 4	C	786	792	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	277	280	anti-parallel
Strand 3	B	591	597	anti-parallel
Strand 4	B	618	623	anti-parallel
Strand 5	B	557	563	anti-parallel
Strand 6	B	649	654	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	547	548	first strand
Strand 2	B	908	909	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	698	first strand
Strand 2	B	805	810	anti-parallel
Strand 3	B	666	670	anti-parallel
Strand 4	B	842	844	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	771	773	first strand
Strand 2	B	779	781	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	89	first strand
Strand 2	C	93	100	anti-parallel
Strand 3	C	50	55	anti-parallel
Strand 4	C	133	136	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	182	first strand
Strand 2	C	287	290	anti-parallel
Strand 3	C	147	151	anti-parallel
Strand 4	C	321	325	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	266	first strand
Strand 2	C	188	194	anti-parallel
Strand 3	C	270	271	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	266	first strand
Strand 2	C	188	194	anti-parallel
Strand 3	C	750	756	parallel
Strand 4	C	739	743	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	277	280	anti-parallel
Strand 3	C	591	597	anti-parallel
Strand 4	C	618	623	anti-parallel
Strand 5	C	557	563	anti-parallel
Strand 6	C	649	654	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	547	548	first strand
Strand 2	C	908	909	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	697	698	first strand
Strand 2	C	805	810	anti-parallel
Strand 3	C	666	670	anti-parallel
Strand 4	C	842	844	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	771	773	first strand
Strand 2	C	779	781	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	15	16	first strand
Strand 2	P	316	317	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	264	267	first strand
Strand 2	P	303	306	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	272	274	first strand
Strand 2	P	277	284	anti-parallel
Strand 3	P	288	293	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	622	624	first strand
Strand 2	P	661	663	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	15	16	first strand
Strand 2	Q	316	317	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	264	267	first strand
Strand 2	Q	303	306	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	272	274	first strand
Strand 2	Q	277	284	anti-parallel
Strand 3	Q	288	293	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	622	624	first strand
Strand 2	Q	661	663	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	15	16	first strand
Strand 2	R	316	317	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	264	267	first strand
Strand 2	R	303	306	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	272	274	first strand
Strand 2	R	277	284	anti-parallel
Strand 3	R	288	293	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	622	624	first strand
Strand 2	R	661	663	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VEJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VEJ