Analysis of interatomic Contacts of Structural Units in PDB entry:
6VEK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VEK entry

There are 2 chains in PDB entry 6VEK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2PHE 336
I
 SER 6PRO 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6VEK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 24Right-handed alpha
Helix 2
AA2
A
26 47Right-handed alpha
Helix 3
AA3
A
48 56Right-handed alpha
Helix 4
AA4
A
62 76Right-handed alpha
Helix 5
AA5
A
93 103Right-handed alpha
Helix 6
AA6
A
112 129Right-handed alpha
Helix 7
AA7
A
131 140Right-handed alpha
Helix 8
AA8
A
141 157Right-handed alpha
Helix 9
AA9
A
157 173Right-handed alpha
Helix 10
AB1
A
202 207Right-handed alpha
Helix 11
AB2
A
216 234Right-handed alpha
Helix 12
AB3
A
234 240Right-handed alpha
Helix 13
AB4
A
241 271Right-handed alpha
Helix 14
AB5
A
276 292Right-handed alpha
Helix 15
AB6
I
7 21Right-handed alpha
Helix 16
AB7
I
30 46Right-handed alpha
Helix 17
AB8
I
46 59Right-handed alpha
Helix 18
AB9
I
66 78Right-handed alpha
Helix 19
AC1
I
81 93Right-handed alpha
Helix 20
AC2
I
97 112Right-handed alpha
Helix 21
AC3
I
123 136Right-handed alpha
Helix 22
AC4
I
138 144Right-handed 310
Helix 23
AC5
I
145 157Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6VEK.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 183first strand
Strand 2
A
189 195anti-parallel
Strand 3
A
198 201anti-parallel
Strand 4
A
326 333parallel
Strand 5
A
310 320anti-parallel
Strand 6
A
300 307anti-parallel
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