Analysis of interatomic Contacts of Structural Units in PDB entry:
6VEL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VEL entry

There are 3 chains in PDB entry 6VEL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 20ARG 235
L
 ASP 20ASN 229
C
 ASP 102ASP 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 6VEL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
47 51Right-handed 310
Helix 2
AA2
H
81 84Right-handed 310
Helix 3
AA3
H
93 95Right-handed 310
Helix 4
AA4
H
106 110Right-handed 310
Helix 5
AA5
H
178 180Right-handed 310
Helix 6
AA6
H
222 225Right-handed 310
Helix 7
AA7
L
98 102Right-handed 310
Helix 8
AA8
L
140 147Right-handed alpha
Helix 9
AA9
L
202 206Right-handed alpha
Helix 10
AB1
C
127 131Right-handed 310
Helix 11
AB2
C
297 300Right-handed 310
Back to top of page

There are 16 sheets in PDB entry 6VEL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
22 25first strand
Strand 2
H
37 44anti-parallel
Strand 3
H
97 102anti-parallel
Strand 4
H
87 92anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 31first strand
Strand 2
H
129 133parallel
Strand 3
H
111 117anti-parallel
Strand 4
H
53 58anti-parallel
Strand 5
H
64 70anti-parallel
Strand 6
H
77 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 31first strand
Strand 2
H
129 133parallel
Strand 3
H
111 117anti-parallel
Strand 4
H
124 125anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
142 146first strand
Strand 2
H
158 167anti-parallel
Strand 3
H
196 205anti-parallel
Strand 4
H
185 187anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
142 146first strand
Strand 2
H
158 167anti-parallel
Strand 3
H
196 205anti-parallel
Strand 4
H
191 193anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
173 176first strand
Strand 2
H
215 221anti-parallel
Strand 3
H
226 232anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
23 26first strand
Strand 2
L
38 44anti-parallel
Strand 3
L
89 94anti-parallel
Strand 4
L
81 85anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
29 32first strand
Strand 2
L
121 125parallel
Strand 3
L
104 109anti-parallel
Strand 4
L
52 57anti-parallel
Strand 5
L
64 68anti-parallel
Strand 6
L
72 73anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
29 32first strand
Strand 2
L
121 125parallel
Strand 3
L
104 109anti-parallel
Strand 4
L
116 117anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
133 137first strand
Strand 2
L
148 158anti-parallel
Strand 3
L
192 201anti-parallel
Strand 4
L
178 182anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
172 173first strand
Strand 2
L
164 169anti-parallel
Strand 3
L
211 216anti-parallel
Strand 4
L
224 228anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 111first strand
Strand 2
C
193 200parallel
Strand 3
C
174 180anti-parallel
Strand 4
C
138 141anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 124first strand
Strand 2
C
160 163anti-parallel
Strand 3
C
152 154anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 209first strand
Strand 2
C
233 234anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
213 219first strand
Strand 2
C
303 313parallel
Strand 3
C
287 295anti-parallel
Strand 4
C
248 255anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
227 230first strand
Strand 2
C
272 275anti-parallel
Strand 3
C
264 266anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il