Analysis of interatomic Contacts of Structural Units in PDB entry:
6VEN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VEN entry

There are 23 chains in PDB entry 6VEN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	THR 3
A	GLN 5	VAL 89
A	ALA 91	ILE 119
A	PRO 121	ALA 135
B	LEU 22	GLY 102
C	LYS 15	PRO 117
D	LYS 31	SER 123
E	PRO 38	VAL 89
E	ALA 91	ILE 119
E	PRO 121	ARG 134
F	VAL 21	PHE 100
G	LYS 13	LYS 118
H	LYS 31	ALA 124
I	T 2	T 147
J	A 1	A 146
K	MET 1	GLY 75
L	MET 1	ARG 313
M	MET 1	LYS 422
N	SER 803	ASN 1080
O	PHE 51	LEU 498
P	SER 120	SER 161
Q	ASN 127	SER 161
R	LEU 202	LEU 349

There are 58 helices in PDB entry 6VEN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	55	Right-handed alpha
Helix 2	AA2	A	63	75	Right-handed alpha
Helix 3	AA3	A	76	78	Right-handed 310
Helix 4	AA4	A	85	114	Right-handed alpha
Helix 5	AA5	A	120	131	Right-handed alpha
Helix 6	AA6	B	25	29	Right-handed 310
Helix 7	AA7	B	30	42	Right-handed alpha
Helix 8	AA8	B	49	76	Right-handed alpha
Helix 9	AA9	B	82	92	Right-handed alpha
Helix 10	AB1	C	18	22	Right-handed 310
Helix 11	AB2	C	26	37	Right-handed alpha
Helix 12	AB3	C	46	73	Right-handed alpha
Helix 13	AB4	C	79	90	Right-handed alpha
Helix 14	AB5	C	92	97	Right-handed alpha
Helix 15	AB6	D	37	49	Right-handed alpha
Helix 16	AB7	D	55	84	Right-handed alpha
Helix 17	AB8	D	90	102	Right-handed alpha
Helix 18	AB9	D	103	122	Right-handed alpha
Helix 19	AC1	E	44	57	Right-handed alpha
Helix 20	AC2	E	63	75	Right-handed alpha
Helix 21	AC3	E	76	78	Right-handed 310
Helix 22	AC4	E	85	114	Right-handed alpha
Helix 23	AC5	E	120	131	Right-handed alpha
Helix 24	AC6	F	25	29	Right-handed 310
Helix 25	AC7	F	30	42	Right-handed alpha
Helix 26	AC8	F	49	76	Right-handed alpha
Helix 27	AC9	F	82	92	Right-handed alpha
Helix 28	AD1	G	26	37	Right-handed alpha
Helix 29	AD2	G	46	73	Right-handed alpha
Helix 30	AD3	G	79	90	Right-handed alpha
Helix 31	AD4	G	92	97	Right-handed alpha
Helix 32	AD5	H	37	49	Right-handed alpha
Helix 33	AD6	H	56	84	Right-handed alpha
Helix 34	AD7	H	92	102	Right-handed alpha
Helix 35	AD8	H	103	123	Right-handed alpha
Helix 36	AD9	K	22	35	Right-handed alpha
Helix 37	AE1	K	56	60	Right-handed 310
Helix 38	AE2	L	180	184	Right-handed 310
Helix 39	AE3	L	185	189	Right-handed 310
Helix 40	AE4	M	347	352	Right-handed 310
Helix 41	AE5	N	804	825	Right-handed alpha
Helix 42	AE6	N	899	918	Right-handed alpha
Helix 43	AE7	N	919	921	Right-handed 310
Helix 44	AE8	N	973	987	Right-handed alpha
Helix 45	AE9	N	1011	1015	Right-handed 310
Helix 46	AF1	O	243	261	Right-handed alpha
Helix 47	AF2	O	293	299	Right-handed alpha
Helix 48	AF3	O	384	392	Right-handed alpha
Helix 49	AF4	O	453	457	Right-handed 310
Helix 50	AF5	O	477	497	Right-handed alpha
Helix 51	AF6	P	121	129	Right-handed alpha
Helix 52	AF7	P	130	144	Right-handed alpha
Helix 53	AF8	P	148	161	Right-handed alpha
Helix 54	AF9	Q	130	141	Right-handed alpha
Helix 55	AG1	Q	149	161	Right-handed alpha
Helix 56	AG2	R	203	241	Right-handed alpha
Helix 57	AG3	R	278	283	Right-handed alpha
Helix 58	AG4	R	310	349	Right-handed alpha

There are 27 sheets in PDB entry 6VEN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	53	54	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	16	first strand
Strand 2	K	2	7	anti-parallel
Strand 3	K	66	69	parallel
Strand 4	K	43	45	anti-parallel
Strand 5	K	48	49	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	21	first strand
Strand 2	L	27	32	anti-parallel
Strand 3	L	35	40	anti-parallel
Strand 4	L	47	51	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	58	62	first strand
Strand 2	L	69	74	anti-parallel
Strand 3	L	79	83	anti-parallel
Strand 4	L	87	92	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	102	104	first strand
Strand 2	L	110	114	anti-parallel
Strand 3	L	120	124	anti-parallel
Strand 4	L	130	134	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	141	145	first strand
Strand 2	L	153	158	anti-parallel
Strand 3	L	163	167	anti-parallel
Strand 4	L	173	176	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	192	197	first strand
Strand 2	L	203	208	anti-parallel
Strand 3	L	213	217	anti-parallel
Strand 4	L	222	227	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	243	246	first strand
Strand 2	L	255	258	anti-parallel
Strand 3	L	264	269	anti-parallel
Strand 4	L	275	280	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	290	296	first strand
Strand 2	L	299	304	anti-parallel
Strand 3	L	309	312	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	23	first strand
Strand 2	M	337	341	anti-parallel
Strand 3	M	326	330	anti-parallel
Strand 4	M	319	321	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	40	44	first strand
Strand 2	M	50	54	anti-parallel
Strand 3	M	60	62	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	75	80	first strand
Strand 2	M	86	91	anti-parallel
Strand 3	M	95	100	anti-parallel
Strand 4	M	109	112	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	123	first strand
Strand 2	M	129	134	anti-parallel
Strand 3	M	140	143	anti-parallel
Strand 4	M	151	152	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	173	176	first strand
Strand 2	M	183	187	anti-parallel
Strand 3	M	192	197	anti-parallel
Strand 4	M	206	211	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	217	222	first strand
Strand 2	M	229	233	anti-parallel
Strand 3	M	238	241	anti-parallel
Strand 4	M	256	260	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	244	246	first strand
Strand 2	M	251	253	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	269	274	first strand
Strand 2	M	282	286	anti-parallel
Strand 3	M	294	297	anti-parallel
Strand 4	M	304	308	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	940	944	first strand
Strand 2	N	950	954	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	963	966	first strand
Strand 2	N	1033	1040	anti-parallel
Strand 3	N	1023	1030	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	969	972	first strand
Strand 2	N	1001	1009	anti-parallel
Strand 3	N	994	998	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	80	82	first strand
Strand 2	O	64	71	anti-parallel
Strand 3	O	320	326	anti-parallel
Strand 4	O	313	317	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	92	97	first strand
Strand 2	O	120	124	anti-parallel
Strand 3	O	437	442	anti-parallel
Strand 4	O	182	187	anti-parallel
Strand 5	O	203	207	anti-parallel
Strand 6	O	213	215	anti-parallel
Strand 7	O	218	220	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	362	368	first strand
Strand 2	O	354	359	anti-parallel
Strand 3	O	234	241	anti-parallel
Strand 4	O	131	138	anti-parallel
Strand 5	O	449	451	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VEN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VEN