Analysis of interatomic Contacts of Structural Units in PDB entry:
6VEQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VEQ entry

There are 16 chains in PDB entry 6VEQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	VAL 3
A	HIS 5	TYR 19
B	LYS 4	SER 9
B	ILE 11	CYS 19
E	GLY 5	PRO 309
F	PHE 705	SER 719
C	GLN 1	SER 118
D	ASP 1	SER 114
K	GLY 5	PRO 309
L	PHE 705	VAL 715
I	GLN 1	SER 117
J	ASP 1	ILE 111
H	LYS 4	SER 9
H	ILE 11	CYS 19
G	GLY 1	VAL 3
G	HIS 5	TYR 19

There are 26 helices in PDB entry 6VEQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	7	Right-handed alpha
Helix 2	AA2	A	12	17	Right-handed alpha
Helix 3	AA3	B	8	19	Right-handed alpha
Helix 4	AA4	E	17	24	Right-handed 310
Helix 5	AA5	E	42	46	Right-handed 310
Helix 6	AA6	E	132	136	Right-handed 310
Helix 7	AA7	E	148	153	Right-handed 310
Helix 8	AA8	E	193	197	Right-handed 310
Helix 9	AA9	E	221	225	Right-handed 310
Helix 10	AB1	E	255	264	Right-handed alpha
Helix 11	AB2	F	706	714	Right-handed alpha
Helix 12	AB3	C	86	90	Right-handed 310
Helix 13	AB4	D	85	89	Right-handed 310
Helix 14	AB5	K	17	24	Right-handed 310
Helix 15	AB6	K	42	46	Right-handed 310
Helix 16	AB7	K	132	136	Right-handed 310
Helix 17	AB8	K	148	153	Right-handed 310
Helix 18	AB9	K	193	197	Right-handed 310
Helix 19	AC1	K	221	225	Right-handed 310
Helix 20	AC2	K	255	264	Right-handed alpha
Helix 21	AC3	L	706	714	Right-handed alpha
Helix 22	AC4	I	86	90	Right-handed 310
Helix 23	AC5	J	85	89	Right-handed 310
Helix 24	AC6	H	8	19	Right-handed alpha
Helix 25	AC7	G	2	7	Right-handed alpha
Helix 26	AC8	G	12	17	Right-handed alpha

There are 26 sheets in PDB entry 6VEQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	14	first strand
Strand 2	E	28	38	parallel
Strand 3	E	56	57	parallel
Strand 4	E	81	82	parallel
Strand 5	E	111	112	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	14	first strand
Strand 2	E	28	38	parallel
Strand 3	E	61	66	parallel
Strand 4	E	91	96	parallel
Strand 5	E	116	120	parallel
Strand 6	E	144	146	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	173	first strand
Strand 2	E	178	180	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	182	184	first strand
Strand 2	E	187	188	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	231	233	first strand
Strand 2	E	236	238	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	254	first strand
Strand 2	E	246	248	anti-parallel
Strand 3	E	283	285	parallel
Strand 4	E	278	280	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	294	first strand
Strand 2	E	301	303	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	77	83	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	112	116	parallel
Strand 3	C	91	98	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	76	81	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	107	111	parallel
Strand 3	D	90	96	anti-parallel
Strand 4	D	39	44	anti-parallel
Strand 5	D	51	55	anti-parallel
Strand 6	D	59	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	107	111	parallel
Strand 3	D	90	96	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	36	37	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	14	first strand
Strand 2	K	28	38	parallel
Strand 3	K	56	57	parallel
Strand 4	K	81	82	parallel
Strand 5	K	111	112	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	14	first strand
Strand 2	K	28	38	parallel
Strand 3	K	61	66	parallel
Strand 4	K	91	96	parallel
Strand 5	K	116	120	parallel
Strand 6	K	144	146	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	171	173	first strand
Strand 2	K	178	180	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	182	184	first strand
Strand 2	K	187	188	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	231	233	first strand
Strand 2	K	236	238	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	252	254	first strand
Strand 2	K	246	248	anti-parallel
Strand 3	K	283	285	parallel
Strand 4	K	278	280	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	292	294	first strand
Strand 2	K	301	303	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	17	25	anti-parallel
Strand 3	I	77	83	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	112	116	parallel
Strand 3	I	91	98	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	76	81	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	110	parallel
Strand 3	J	90	96	anti-parallel
Strand 4	J	39	44	anti-parallel
Strand 5	J	50	55	anti-parallel
Strand 6	J	59	60	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	110	parallel
Strand 3	J	90	96	anti-parallel
Strand 4	J	102	103	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	30	31	first strand
Strand 2	J	36	37	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VEQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VEQ