Analysis of interatomic Contacts of Structural Units in PDB entry:
6VFR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VFR entry

There are 2 chains in PDB entry 6VFR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	ILE 428
B	LYS 1	ILE 428

There are 16 helices in PDB entry 6VFR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	24	Right-handed alpha
Helix 2	AA2	A	24	29	Right-handed alpha
Helix 3	AA3	A	33	37	Right-handed 310
Helix 4	AA4	A	66	72	Right-handed alpha
Helix 5	AA5	A	139	142	Right-handed 310
Helix 6	AA6	A	248	253	Right-handed alpha
Helix 7	AA7	A	263	269	Right-handed alpha
Helix 8	AA8	A	362	366	Right-handed 310
Helix 9	AA9	B	20	24	Right-handed alpha
Helix 10	AB1	B	24	29	Right-handed alpha
Helix 11	AB2	B	33	37	Right-handed 310
Helix 12	AB3	B	66	72	Right-handed alpha
Helix 13	AB4	B	139	142	Right-handed 310
Helix 14	AB5	B	248	252	Right-handed 310
Helix 15	AB6	B	263	269	Right-handed alpha
Helix 16	AB7	B	362	366	Right-handed 310

There are 18 sheets in PDB entry 6VFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	8	first strand
Strand 2	A	93	101	parallel
Strand 3	A	78	86	anti-parallel
Strand 4	A	38	42	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	58	61	anti-parallel
Strand 3	A	50	52	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	120	first strand
Strand 2	A	200	210	parallel
Strand 3	A	184	193	anti-parallel
Strand 4	A	144	149	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	167	173	anti-parallel
Strand 3	A	155	161	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	243	244	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	229	first strand
Strand 2	A	309	318	parallel
Strand 3	A	292	301	anti-parallel
Strand 4	A	254	258	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	278	281	anti-parallel
Strand 3	A	270	272	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	330	first strand
Strand 2	A	353	358	anti-parallel
Strand 3	A	387	392	anti-parallel
Strand 4	A	378	384	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	419	427	parallel
Strand 3	A	403	412	anti-parallel
Strand 4	A	368	372	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	8	first strand
Strand 2	B	93	101	parallel
Strand 3	B	78	86	anti-parallel
Strand 4	B	38	42	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	58	61	anti-parallel
Strand 3	B	50	52	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	120	first strand
Strand 2	B	200	210	parallel
Strand 3	B	184	193	anti-parallel
Strand 4	B	144	149	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	167	173	anti-parallel
Strand 3	B	155	161	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	243	244	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	229	first strand
Strand 2	B	309	318	parallel
Strand 3	B	292	301	anti-parallel
Strand 4	B	254	258	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	240	first strand
Strand 2	B	278	281	anti-parallel
Strand 3	B	270	272	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	330	first strand
Strand 2	B	353	358	anti-parallel
Strand 3	B	387	392	anti-parallel
Strand 4	B	378	384	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	419	427	parallel
Strand 3	B	403	412	anti-parallel
Strand 4	B	368	374	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VFR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VFR