Analysis of interatomic Contacts of Structural Units in PDB entry:
6VFT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VFT entry

There are 2 chains in PDB entry 6VFT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	LEU 446
B	LEU 1	GLU 275

There are 24 helices in PDB entry 6VFT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	26	Right-handed alpha
Helix 2	AA2	A	74	80	Right-handed alpha
Helix 3	AA3	A	144	147	Right-handed 310
Helix 4	AA4	A	255	259	Right-handed 310
Helix 5	AA5	A	270	276	Right-handed alpha
Helix 6	AA6	A	364	368	Right-handed 310
Helix 7	AA7	B	21	26	Right-handed alpha
Helix 8	AA8	B	74	80	Right-handed alpha
Helix 9	AA9	B	144	147	Right-handed 310
Helix 10	AB1	B	255	259	Right-handed 310
Helix 11	AB2	B	270	276	Right-handed alpha
Helix 12	AB3	B	364	368	Right-handed 310
Helix 13	AB4	C	21	26	Right-handed alpha
Helix 14	AB5	C	74	80	Right-handed alpha
Helix 15	AB6	C	144	147	Right-handed 310
Helix 16	AB7	C	255	259	Right-handed 310
Helix 17	AB8	C	270	276	Right-handed alpha
Helix 18	AB9	C	364	368	Right-handed 310
Helix 19	AC1	D	21	25	Right-handed alpha
Helix 20	AC2	D	74	80	Right-handed alpha
Helix 21	AC3	D	144	147	Right-handed 310
Helix 22	AC4	D	255	259	Right-handed 310
Helix 23	AC5	D	270	276	Right-handed alpha
Helix 24	AC6	D	364	368	Right-handed 310

There are 36 sheets in PDB entry 6VFT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	9	first strand
Strand 2	A	97	106	parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	48	52	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	66	69	anti-parallel
Strand 3	A	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	125	first strand
Strand 2	A	207	217	parallel
Strand 3	A	191	200	anti-parallel
Strand 4	A	149	155	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	174	180	anti-parallel
Strand 3	A	162	168	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	250	251	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	236	first strand
Strand 2	A	315	325	parallel
Strand 3	A	299	308	anti-parallel
Strand 4	A	261	265	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	285	288	anti-parallel
Strand 3	A	277	279	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	338	first strand
Strand 2	A	353	360	anti-parallel
Strand 3	A	404	409	anti-parallel
Strand 4	A	395	401	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	436	445	parallel
Strand 3	A	420	429	anti-parallel
Strand 4	A	370	374	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	9	first strand
Strand 2	B	97	106	parallel
Strand 3	B	86	93	anti-parallel
Strand 4	B	47	52	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	20	first strand
Strand 2	B	66	69	anti-parallel
Strand 3	B	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	125	first strand
Strand 2	B	207	217	parallel
Strand 3	B	191	200	anti-parallel
Strand 4	B	149	155	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	174	180	anti-parallel
Strand 3	B	162	168	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	250	251	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	236	first strand
Strand 2	B	315	325	parallel
Strand 3	B	299	308	anti-parallel
Strand 4	B	261	265	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	285	288	anti-parallel
Strand 3	B	277	279	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	338	first strand
Strand 2	B	353	360	anti-parallel
Strand 3	B	404	409	anti-parallel
Strand 4	B	395	401	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	436	445	parallel
Strand 3	B	420	429	anti-parallel
Strand 4	B	370	374	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	9	first strand
Strand 2	C	97	106	parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	47	52	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	C	66	69	anti-parallel
Strand 3	C	58	60	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	125	first strand
Strand 2	C	207	217	parallel
Strand 3	C	191	200	anti-parallel
Strand 4	C	149	155	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	135	first strand
Strand 2	C	174	180	anti-parallel
Strand 3	C	162	168	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	226	first strand
Strand 2	C	250	251	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	236	first strand
Strand 2	C	315	325	parallel
Strand 3	C	299	308	anti-parallel
Strand 4	C	261	265	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	285	288	anti-parallel
Strand 3	C	277	279	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	339	first strand
Strand 2	C	353	360	anti-parallel
Strand 3	C	404	409	anti-parallel
Strand 4	C	395	401	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	345	first strand
Strand 2	C	436	446	parallel
Strand 3	C	420	429	anti-parallel
Strand 4	C	370	374	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	9	first strand
Strand 2	D	97	106	parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	47	49	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	66	69	anti-parallel
Strand 3	D	58	60	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	125	first strand
Strand 2	D	207	217	parallel
Strand 3	D	191	200	anti-parallel
Strand 4	D	149	155	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	135	first strand
Strand 2	D	174	180	anti-parallel
Strand 3	D	162	168	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	226	first strand
Strand 2	D	250	251	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	236	first strand
Strand 2	D	315	325	parallel
Strand 3	D	299	308	anti-parallel
Strand 4	D	261	265	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	285	288	anti-parallel
Strand 3	D	277	279	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	339	first strand
Strand 2	D	353	360	anti-parallel
Strand 3	D	404	409	anti-parallel
Strand 4	D	395	401	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	345	first strand
Strand 2	D	436	446	parallel
Strand 3	D	420	429	anti-parallel
Strand 4	D	370	374	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VFT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VFT