Analysis of interatomic Contacts of Structural Units in PDB entry:
6VFU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VFU entry

There are 2 chains in PDB entry 6VFU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LEU 1	HIS 428
A	LEU 1	GLU 246

There are 18 helices in PDB entry 6VFU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	20	29	Right-handed alpha
Helix 2	AA2	C	67	72	Right-handed alpha
Helix 3	AA3	C	137	140	Right-handed 310
Helix 4	AA4	C	246	250	Right-handed 310
Helix 5	AA5	C	262	267	Right-handed alpha
Helix 6	AA6	C	357	361	Right-handed 310
Helix 7	AA7	A	20	29	Right-handed alpha
Helix 8	AA8	A	67	72	Right-handed alpha
Helix 9	AA9	A	137	140	Right-handed 310
Helix 10	AB1	A	246	250	Right-handed 310
Helix 11	AB2	A	263	267	Right-handed alpha
Helix 12	AB3	A	357	361	Right-handed 310
Helix 13	AB4	B	20	29	Right-handed alpha
Helix 14	AB5	B	67	72	Right-handed alpha
Helix 15	AB6	B	137	140	Right-handed 310
Helix 16	AB7	B	246	250	Right-handed 310
Helix 17	AB8	B	261	267	Right-handed alpha
Helix 18	AB9	B	357	361	Right-handed 310

There are 27 sheets in PDB entry 6VFU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	9	first strand
Strand 2	C	91	99	parallel
Strand 3	C	79	86	anti-parallel
Strand 4	C	40	45	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	19	first strand
Strand 2	C	60	62	anti-parallel
Strand 3	C	51	53	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	118	first strand
Strand 2	C	198	208	parallel
Strand 3	C	182	191	anti-parallel
Strand 4	C	142	147	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	128	first strand
Strand 2	C	165	171	anti-parallel
Strand 3	C	153	159	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	241	242	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	227	first strand
Strand 2	C	307	316	parallel
Strand 3	C	290	299	anti-parallel
Strand 4	C	252	256	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	238	first strand
Strand 2	C	276	279	anti-parallel
Strand 3	C	268	270	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	328	first strand
Strand 2	C	346	353	anti-parallel
Strand 3	C	381	386	anti-parallel
Strand 4	C	373	378	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	338	first strand
Strand 2	C	413	423	parallel
Strand 3	C	397	406	anti-parallel
Strand 4	C	363	367	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	9	first strand
Strand 2	A	91	99	parallel
Strand 3	A	79	86	anti-parallel
Strand 4	A	40	45	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	60	62	anti-parallel
Strand 3	A	51	53	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	118	first strand
Strand 2	A	198	208	parallel
Strand 3	A	182	191	anti-parallel
Strand 4	A	142	147	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	165	171	anti-parallel
Strand 3	A	153	159	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	241	242	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	227	first strand
Strand 2	A	307	316	parallel
Strand 3	A	290	299	anti-parallel
Strand 4	A	252	257	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	238	first strand
Strand 2	A	276	279	anti-parallel
Strand 3	A	268	270	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	328	first strand
Strand 2	A	346	353	anti-parallel
Strand 3	A	382	386	anti-parallel
Strand 4	A	373	377	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	338	first strand
Strand 2	A	413	423	parallel
Strand 3	A	397	406	anti-parallel
Strand 4	A	363	367	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	9	first strand
Strand 2	B	91	99	parallel
Strand 3	B	79	85	anti-parallel
Strand 4	B	41	45	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	60	62	anti-parallel
Strand 3	B	51	53	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	118	first strand
Strand 2	B	198	208	parallel
Strand 3	B	182	191	anti-parallel
Strand 4	B	142	147	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	128	first strand
Strand 2	B	164	171	anti-parallel
Strand 3	B	153	161	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	241	242	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	227	first strand
Strand 2	B	307	316	parallel
Strand 3	B	290	299	anti-parallel
Strand 4	B	252	256	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	238	first strand
Strand 2	B	276	279	anti-parallel
Strand 3	B	268	270	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	328	first strand
Strand 2	B	346	353	anti-parallel
Strand 3	B	382	386	anti-parallel
Strand 4	B	373	377	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	413	422	parallel
Strand 3	B	397	406	anti-parallel
Strand 4	B	363	367	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VFU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VFU