Analysis of interatomic Contacts of Structural Units in PDB entry:
6VFW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VFW entry

There are 2 chains in PDB entry 6VFW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	HIS 440
B	GLN 2	VAL 252

There are 43 helices in PDB entry 6VFW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	25	Right-handed alpha
Helix 2	AA2	A	27	29	Right-handed 310
Helix 3	AA3	A	30	35	Right-handed alpha
Helix 4	AA4	A	40	43	Right-handed 310
Helix 5	AA5	A	63	68	Right-handed alpha
Helix 6	AA6	A	134	137	Right-handed 310
Helix 7	AA7	A	262	266	Right-handed 310
Helix 8	AA8	A	277	283	Right-handed alpha
Helix 9	AA9	A	370	374	Right-handed 310
Helix 10	AB1	B	20	25	Right-handed alpha
Helix 11	AB2	B	30	35	Right-handed alpha
Helix 12	AB3	B	40	43	Right-handed 310
Helix 13	AB4	B	63	68	Right-handed alpha
Helix 14	AB5	B	134	137	Right-handed 310
Helix 15	AB6	B	262	266	Right-handed 310
Helix 16	AB7	B	277	283	Right-handed alpha
Helix 17	AB8	B	370	374	Right-handed 310
Helix 18	AB9	C	20	25	Right-handed alpha
Helix 19	AC1	C	27	29	Right-handed 310
Helix 20	AC2	C	30	35	Right-handed alpha
Helix 21	AC3	C	40	43	Right-handed 310
Helix 22	AC4	C	63	68	Right-handed alpha
Helix 23	AC5	C	134	137	Right-handed 310
Helix 24	AC6	C	262	266	Right-handed 310
Helix 25	AC7	C	277	283	Right-handed alpha
Helix 26	AC8	C	370	374	Right-handed 310
Helix 27	AC9	D	20	25	Right-handed alpha
Helix 28	AD1	D	27	31	Right-handed 310
Helix 29	AD2	D	40	43	Right-handed 310
Helix 30	AD3	D	63	68	Right-handed alpha
Helix 31	AD4	D	134	137	Right-handed 310
Helix 32	AD5	D	262	266	Right-handed 310
Helix 33	AD6	D	277	283	Right-handed alpha
Helix 34	AD7	D	370	374	Right-handed 310
Helix 35	AD8	E	20	25	Right-handed alpha
Helix 36	AD9	E	27	29	Right-handed 310
Helix 37	AE1	E	30	35	Right-handed alpha
Helix 38	AE2	E	40	43	Right-handed 310
Helix 39	AE3	E	63	68	Right-handed alpha
Helix 40	AE4	E	134	137	Right-handed 310
Helix 41	AE5	E	262	266	Right-handed 310
Helix 42	AE6	E	277	283	Right-handed alpha
Helix 43	AE7	E	370	374	Right-handed 310

There are 41 sheets in PDB entry 6VFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	A	87	96	parallel
Strand 3	A	75	82	anti-parallel
Strand 4	A	37	38	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	55	58	anti-parallel
Strand 3	A	47	50	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	115	first strand
Strand 2	A	214	224	parallel
Strand 3	A	179	188	anti-parallel
Strand 4	A	139	144	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	162	168	anti-parallel
Strand 3	A	150	156	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	243	first strand
Strand 2	A	323	332	parallel
Strand 3	A	306	315	anti-parallel
Strand 4	A	268	272	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	254	first strand
Strand 2	A	292	295	anti-parallel
Strand 3	A	284	286	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	346	first strand
Strand 2	A	359	366	anti-parallel
Strand 3	A	395	400	anti-parallel
Strand 4	A	386	389	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	427	437	parallel
Strand 3	A	411	420	anti-parallel
Strand 4	A	376	380	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	8	first strand
Strand 2	B	87	96	parallel
Strand 3	B	75	82	anti-parallel
Strand 4	B	37	38	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	55	58	anti-parallel
Strand 3	B	47	50	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	115	first strand
Strand 2	B	214	224	parallel
Strand 3	B	179	188	anti-parallel
Strand 4	B	139	144	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	125	first strand
Strand 2	B	161	168	anti-parallel
Strand 3	B	150	158	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	243	first strand
Strand 2	B	323	332	parallel
Strand 3	B	306	315	anti-parallel
Strand 4	B	268	272	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	254	first strand
Strand 2	B	292	295	anti-parallel
Strand 3	B	284	286	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	346	first strand
Strand 2	B	359	366	anti-parallel
Strand 3	B	395	399	anti-parallel
Strand 4	B	387	389	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	351	first strand
Strand 2	B	427	437	parallel
Strand 3	B	411	420	anti-parallel
Strand 4	B	376	380	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	8	first strand
Strand 2	C	87	96	parallel
Strand 3	C	75	82	anti-parallel
Strand 4	C	37	38	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	19	first strand
Strand 2	C	55	58	anti-parallel
Strand 3	C	47	50	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	115	first strand
Strand 2	C	214	224	parallel
Strand 3	C	179	188	anti-parallel
Strand 4	C	139	144	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	125	first strand
Strand 2	C	162	168	anti-parallel
Strand 3	C	150	156	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	243	first strand
Strand 2	C	323	332	parallel
Strand 3	C	306	315	anti-parallel
Strand 4	C	268	272	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	254	first strand
Strand 2	C	292	295	anti-parallel
Strand 3	C	284	286	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	346	first strand
Strand 2	C	359	366	anti-parallel
Strand 3	C	395	400	anti-parallel
Strand 4	C	386	392	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	351	first strand
Strand 2	C	427	437	parallel
Strand 3	C	411	420	anti-parallel
Strand 4	C	376	380	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	8	first strand
Strand 2	D	87	96	parallel
Strand 3	D	75	82	anti-parallel
Strand 4	D	37	38	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	19	first strand
Strand 2	D	55	58	anti-parallel
Strand 3	D	47	49	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	115	first strand
Strand 2	D	214	224	parallel
Strand 3	D	179	188	anti-parallel
Strand 4	D	139	144	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	125	first strand
Strand 2	D	162	168	anti-parallel
Strand 3	D	150	156	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	233	first strand
Strand 2	D	257	258	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	243	first strand
Strand 2	D	323	332	parallel
Strand 3	D	306	315	anti-parallel
Strand 4	D	268	272	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	254	first strand
Strand 2	D	292	295	anti-parallel
Strand 3	D	284	286	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	346	first strand
Strand 2	D	361	366	anti-parallel
Strand 3	D	395	399	anti-parallel
Strand 4	D	387	389	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	351	first strand
Strand 2	D	427	437	parallel
Strand 3	D	411	420	anti-parallel
Strand 4	D	376	380	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	8	first strand
Strand 2	E	87	96	parallel
Strand 3	E	75	82	anti-parallel
Strand 4	E	37	38	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	19	first strand
Strand 2	E	55	58	anti-parallel
Strand 3	E	47	50	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	115	first strand
Strand 2	E	214	224	parallel
Strand 3	E	179	188	anti-parallel
Strand 4	E	139	144	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	126	first strand
Strand 2	E	162	168	anti-parallel
Strand 3	E	150	156	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	243	first strand
Strand 2	E	323	332	parallel
Strand 3	E	306	315	anti-parallel
Strand 4	E	268	272	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	251	254	first strand
Strand 2	E	292	295	anti-parallel
Strand 3	E	284	286	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	346	first strand
Strand 2	E	359	366	anti-parallel
Strand 3	E	395	400	anti-parallel
Strand 4	E	386	389	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	349	351	first strand
Strand 2	E	427	437	parallel
Strand 3	E	411	420	anti-parallel
Strand 4	E	376	380	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VFW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VFW