Analysis of interatomic Contacts of Structural Units in PDB entry:
6VFY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VFY entry

There are 3 chains in PDB entry 6VFY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ILE 58	GLN 371
E	ILE 58	GLN 371
F	ILE 58	GLN 371

There are 18 helices in PDB entry 6VFY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	65	69	Right-handed 310
Helix 2	AA2	D	76	97	Right-handed alpha
Helix 3	AA3	D	187	205	Right-handed alpha
Helix 4	AA4	D	226	231	Right-handed alpha
Helix 5	AA5	D	250	271	Right-handed alpha
Helix 6	AA6	D	355	370	Right-handed alpha
Helix 7	AA7	E	65	69	Right-handed 310
Helix 8	AA8	E	76	97	Right-handed alpha
Helix 9	AA9	E	187	205	Right-handed alpha
Helix 10	AB1	E	226	231	Right-handed alpha
Helix 11	AB2	E	250	271	Right-handed alpha
Helix 12	AB3	E	355	370	Right-handed alpha
Helix 13	AB4	F	65	69	Right-handed 310
Helix 14	AB5	F	76	97	Right-handed alpha
Helix 15	AB6	F	187	205	Right-handed alpha
Helix 16	AB7	F	226	231	Right-handed alpha
Helix 17	AB8	F	250	271	Right-handed alpha
Helix 18	AB9	F	355	370	Right-handed alpha

There are 6 sheets in PDB entry 6VFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	63	first strand
Strand 2	D	125	135	anti-parallel
Strand 3	D	140	149	anti-parallel
Strand 4	D	156	170	anti-parallel
Strand 5	D	104	116	anti-parallel
Strand 6	D	275	279	anti-parallel
Strand 7	D	327	337	anti-parallel
Strand 8	D	308	318	anti-parallel
Strand 9	D	292	303	anti-parallel
Strand 10	D	232	237	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	63	first strand
Strand 2	D	125	135	anti-parallel
Strand 3	D	140	149	anti-parallel
Strand 4	D	156	170	anti-parallel
Strand 5	D	104	116	anti-parallel
Strand 6	D	282	284	anti-parallel
Strand 7	D	327	337	anti-parallel
Strand 8	D	308	318	anti-parallel
Strand 9	D	292	303	anti-parallel
Strand 10	D	232	237	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	63	first strand
Strand 2	E	125	135	anti-parallel
Strand 3	E	140	149	anti-parallel
Strand 4	E	156	170	anti-parallel
Strand 5	E	104	116	anti-parallel
Strand 6	E	274	279	anti-parallel
Strand 7	E	327	339	anti-parallel
Strand 8	E	308	318	anti-parallel
Strand 9	E	292	303	anti-parallel
Strand 10	E	232	237	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	63	first strand
Strand 2	E	125	135	anti-parallel
Strand 3	E	140	149	anti-parallel
Strand 4	E	156	170	anti-parallel
Strand 5	E	104	116	anti-parallel
Strand 6	E	282	284	anti-parallel
Strand 7	E	327	339	anti-parallel
Strand 8	E	345	346	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	63	first strand
Strand 2	F	125	135	anti-parallel
Strand 3	F	140	149	anti-parallel
Strand 4	F	156	170	anti-parallel
Strand 5	F	104	116	anti-parallel
Strand 6	F	275	279	anti-parallel
Strand 7	F	327	337	anti-parallel
Strand 8	F	308	318	anti-parallel
Strand 9	F	292	303	anti-parallel
Strand 10	F	232	237	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	63	first strand
Strand 2	F	125	135	anti-parallel
Strand 3	F	140	149	anti-parallel
Strand 4	F	156	170	anti-parallel
Strand 5	F	104	116	anti-parallel
Strand 6	F	282	284	anti-parallel
Strand 7	F	327	337	anti-parallel
Strand 8	F	308	318	anti-parallel
Strand 9	F	292	303	anti-parallel
Strand 10	F	232	237	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VFY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VFY